Atomistry » Chlorine » PDB 2ay0-2bch » 2b8o
Atomistry »
  Chlorine »
    PDB 2ay0-2bch »
      2b8o »

Chlorine in PDB 2b8o: Crystal Structure of Glu-Gly-Arg-Chloromethyl Ketone-Factor Viia/Soluble Tissue Factor Complex

Enzymatic activity of Crystal Structure of Glu-Gly-Arg-Chloromethyl Ketone-Factor Viia/Soluble Tissue Factor Complex

All present enzymatic activity of Crystal Structure of Glu-Gly-Arg-Chloromethyl Ketone-Factor Viia/Soluble Tissue Factor Complex:
3.4.21.21;

Protein crystallography data

The structure of Crystal Structure of Glu-Gly-Arg-Chloromethyl Ketone-Factor Viia/Soluble Tissue Factor Complex, PDB code: 2b8o was solved by S.P.Bajaj, A.E.Schmidt, K.Padmanabhan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 70.280, 81.110, 126.860, 90.00, 90.00, 90.00
R / Rfree (%) 22.5 / 28.5

Other elements in 2b8o:

The structure of Crystal Structure of Glu-Gly-Arg-Chloromethyl Ketone-Factor Viia/Soluble Tissue Factor Complex also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Zinc (Zn) 2 atoms
Calcium (Ca) 6 atoms
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Glu-Gly-Arg-Chloromethyl Ketone-Factor Viia/Soluble Tissue Factor Complex (pdb code 2b8o). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Glu-Gly-Arg-Chloromethyl Ketone-Factor Viia/Soluble Tissue Factor Complex, PDB code: 2b8o:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 2b8o

Go back to Chlorine Binding Sites List in 2b8o
Chlorine binding site 1 out of 3 in the Crystal Structure of Glu-Gly-Arg-Chloromethyl Ketone-Factor Viia/Soluble Tissue Factor Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Glu-Gly-Arg-Chloromethyl Ketone-Factor Viia/Soluble Tissue Factor Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl514

b:49.8
occ:1.00
 CB H:0GJ1 2.9 34.0 1.0
O H:GLY219 3.1 15.4 1.0
OE2 H:0GJ1 3.1 32.9 1.0
O H:GLY216 3.1 15.7 1.0
CD H:0GJ1 3.1 34.3 1.0
N H:0GJ1 3.3 33.0 1.0
O H:0GJ1 3.3 27.2 1.0
CA H:0GJ1 3.4 32.6 1.0
NE H:0GJ1 3.5 25.8 1.0
OE1 H:0GJ1 3.6 34.1 1.0
CG H:0GJ1 3.6 33.6 1.0
N H:GLY219 3.7 18.3 1.0
C H:GLY219 3.7 15.3 1.0
C H:0GJ1 3.8 28.9 1.0
CA H:GLY219 3.9 14.5 1.0
CG1 H:0GJ1 4.0 27.9 1.0
SG H:CYS220 4.1 19.0 1.0
NH1 H:0GJ1 4.1 23.0 1.0
C H:GLY216 4.3 14.6 1.0
CZ H:0GJ1 4.3 27.3 1.0
CD1 H:0GJ1 4.4 24.5 1.0
C H:GLN217 4.5 16.9 1.0
O1 H:0GJ1 4.6 30.0 1.0
N H:CYS220 4.7 15.9 1.0
O H:HOH606 4.8 19.6 1.0
OD1 H:ASP146 4.9 29.2 1.0
CA H:GLN217 4.9 15.9 1.0

Chlorine binding site 2 out of 3 in 2b8o

Go back to Chlorine Binding Sites List in 2b8o
Chlorine binding site 2 out of 3 in the Crystal Structure of Glu-Gly-Arg-Chloromethyl Ketone-Factor Viia/Soluble Tissue Factor Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Glu-Gly-Arg-Chloromethyl Ketone-Factor Viia/Soluble Tissue Factor Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl515

b:27.8
occ:1.00
 CD2 H:HIS109 3.1 26.7 1.0
CB H:GLN110 3.2 21.2 1.0
O H:HOH582 3.2 20.9 1.0
CG H:GLN110 3.4 23.3 1.0
N H:GLN110 3.5 19.5 1.0
CD H:ARG83 3.6 3.3 1.0
N H:ARG84 3.6 6.8 1.0
CG H:HIS109 3.7 25.7 1.0
CG H:ARG84 3.9 27.9 1.0
NE2 H:HIS109 3.9 24.4 1.0
CB H:HIS109 3.9 24.5 1.0
CA H:GLN110 3.9 19.2 1.0
CA H:ARG83 4.0 3.6 1.0
CB H:ARG83 4.3 5.9 1.0
C H:ARG83 4.3 6.0 1.0
C H:HIS109 4.4 21.2 1.0
O H:GLN110 4.5 21.0 1.0
CD H:ARG84 4.5 41.9 1.0
NE H:ARG84 4.5 45.5 1.0
NE H:ARG83 4.6 2.0 1.0
CG H:ARG83 4.6 4.6 1.0
C H:GLN110 4.6 16.7 1.0
CA H:HIS109 4.6 20.7 1.0
CA H:ARG84 4.7 9.8 1.0
ND1 H:HIS109 4.7 26.3 1.0
O H:ARG84 4.8 3.6 1.0
CE1 H:HIS109 4.8 26.1 1.0
CD H:GLN110 4.8 24.9 1.0
CB H:ARG84 4.9 20.4 1.0

Chlorine binding site 3 out of 3 in 2b8o

Go back to Chlorine Binding Sites List in 2b8o
Chlorine binding site 3 out of 3 in the Crystal Structure of Glu-Gly-Arg-Chloromethyl Ketone-Factor Viia/Soluble Tissue Factor Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Glu-Gly-Arg-Chloromethyl Ketone-Factor Viia/Soluble Tissue Factor Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
T:Cl516

b:23.6
occ:1.00
 OH T:TYR153 2.5 2.1 1.0
N T:GLU130 3.2 17.2 1.0
CE2 T:TYR153 3.3 2.0 1.0
CZ T:TYR153 3.3 3.3 1.0
ND2 T:ASN173 3.5 21.5 1.0
OD1 T:ASN173 3.7 13.7 1.0
CA T:ASP129 3.8 14.2 1.0
C T:ASP129 4.0 15.5 1.0
CG T:ASN173 4.0 17.2 1.0
CB T:GLU130 4.0 16.0 1.0
CA T:GLU130 4.1 19.0 1.0
OD1 T:ASP129 4.2 23.8 1.0
N T:ARG144 4.2 9.0 1.0
N T:LEU143 4.2 8.3 1.0
CB T:ARG144 4.3 10.1 1.0
CB T:SER142 4.3 17.4 1.0
O T:GLU130 4.4 23.8 1.0
CD2 T:LEU151 4.4 2.0 1.0
O T:GLU128 4.5 3.1 1.0
CB T:LEU143 4.5 5.5 1.0
CB T:ASP129 4.6 14.8 1.0
CE1 T:TYR153 4.6 5.1 1.0
CD2 T:TYR153 4.7 4.3 1.0
C T:GLU130 4.7 20.4 1.0
CA T:LEU143 4.7 5.0 1.0
C T:LEU143 4.7 4.8 1.0
CG T:GLU130 4.8 16.9 1.0
CG T:ASP129 4.8 20.4 1.0
CA T:ARG144 4.9 10.0 1.0
N T:ASP129 4.9 10.9 1.0

Reference:

S.P.Bajaj, A.E.Schmidt, K.Padmanabhan. Crystal Structure of Factor Viia/Soluble Tissue Factor Complexed with Glu-Gly-Arg-Chloromethyl Ketone To Be Published.
Page generated: Sat Jul 20 05:36:43 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy