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Chlorine in PDB 2cbj: Structure of the Clostridium Perfringens Nagj Family 84 Glycoside Hydrolase, A Homologue of Human O-Glcnacase in Complex with Pugnac

Enzymatic activity of Structure of the Clostridium Perfringens Nagj Family 84 Glycoside Hydrolase, A Homologue of Human O-Glcnacase in Complex with Pugnac

All present enzymatic activity of Structure of the Clostridium Perfringens Nagj Family 84 Glycoside Hydrolase, A Homologue of Human O-Glcnacase in Complex with Pugnac:
3.2.1.35;

Protein crystallography data

The structure of Structure of the Clostridium Perfringens Nagj Family 84 Glycoside Hydrolase, A Homologue of Human O-Glcnacase in Complex with Pugnac, PDB code: 2cbj was solved by F.V.Rao, H.C.Dorfmueller, F.Villa, M.Allwood, I.M.Eggleston, D.M.F.Vanaalten, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.35
Space group I 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 129.613, 145.745, 152.800, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 24.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of the Clostridium Perfringens Nagj Family 84 Glycoside Hydrolase, A Homologue of Human O-Glcnacase in Complex with Pugnac (pdb code 2cbj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of the Clostridium Perfringens Nagj Family 84 Glycoside Hydrolase, A Homologue of Human O-Glcnacase in Complex with Pugnac, PDB code: 2cbj:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2cbj

Go back to Chlorine Binding Sites List in 2cbj
Chlorine binding site 1 out of 2 in the Structure of the Clostridium Perfringens Nagj Family 84 Glycoside Hydrolase, A Homologue of Human O-Glcnacase in Complex with Pugnac


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the Clostridium Perfringens Nagj Family 84 Glycoside Hydrolase, A Homologue of Human O-Glcnacase in Complex with Pugnac within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1626

b:63.4
occ:1.00
 N B:PHE265 3.6 48.7 1.0
N B:ASP266 3.9 51.5 1.0
CB B:PHE265 4.3 45.3 1.0
OD2 B:ASP266 4.3 60.8 1.0
CA B:PHE265 4.4 48.0 1.0
CD2 B:PHE265 4.4 46.4 1.0
CA B:ARG264 4.4 49.5 1.0
C B:ARG264 4.5 47.9 1.0
CB B:ARG264 4.6 50.5 1.0
CG B:ASP266 4.7 59.3 1.0
C B:PHE265 4.7 51.4 1.0
CB B:ASP266 4.8 56.5 1.0
CG B:PHE265 4.8 46.2 1.0
CA B:ASP266 4.9 54.8 1.0
CG B:ARG264 5.0 54.3 1.0

Chlorine binding site 2 out of 2 in 2cbj

Go back to Chlorine Binding Sites List in 2cbj
Chlorine binding site 2 out of 2 in the Structure of the Clostridium Perfringens Nagj Family 84 Glycoside Hydrolase, A Homologue of Human O-Glcnacase in Complex with Pugnac


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the Clostridium Perfringens Nagj Family 84 Glycoside Hydrolase, A Homologue of Human O-Glcnacase in Complex with Pugnac within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1627

b:59.1
occ:0.50
 N B:SER64 4.2 73.9 1.0
CB B:THR63 4.2 73.6 1.0
OG B:SER64 4.4 75.0 1.0
CG2 B:THR63 4.5 74.4 1.0
CB B:SER64 4.5 75.0 1.0
CA B:THR63 4.7 71.5 1.0
CA B:SER64 5.0 73.8 1.0
C B:THR63 5.0 72.2 1.0

Reference:

F.V.Rao, H.C.Dorfmueller, F.Villa, M.Allwood, I.M.Eggleston, D.M.Van Aalten. Structural Insights Into the Mechanism and Inhibition of Eukaryotic O-Glcnac Hydrolysis. Embo J. V. 25 1569 2006.
ISSN: ISSN 0261-4189
PubMed: 16541109
DOI: 10.1038/SJ.EMBOJ.7601026
Page generated: Thu Jul 10 21:42:48 2025

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