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Chlorine in PDB 2cun: Crystal Structure of Phosphoglycerate Kinase From Pyrococcus Horikoshii OT3

Enzymatic activity of Crystal Structure of Phosphoglycerate Kinase From Pyrococcus Horikoshii OT3

All present enzymatic activity of Crystal Structure of Phosphoglycerate Kinase From Pyrococcus Horikoshii OT3:
2.7.2.3;

Protein crystallography data

The structure of Crystal Structure of Phosphoglycerate Kinase From Pyrococcus Horikoshii OT3, PDB code: 2cun was solved by H.Mizutani, N.Kunishima, Riken Structural Genomics/Proteomicsinitiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 49.854, 123.327, 82.943, 90.00, 95.42, 90.00
R / Rfree (%) 21 / 24.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Phosphoglycerate Kinase From Pyrococcus Horikoshii OT3 (pdb code 2cun). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Phosphoglycerate Kinase From Pyrococcus Horikoshii OT3, PDB code: 2cun:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2cun

Go back to Chlorine Binding Sites List in 2cun
Chlorine binding site 1 out of 2 in the Crystal Structure of Phosphoglycerate Kinase From Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Phosphoglycerate Kinase From Pyrococcus Horikoshii OT3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl505

b:64.1
occ:1.00
O1 A:GOL501 2.7 54.0 1.0
O A:HOH591 2.9 48.5 1.0
NE A:ARG154 2.9 38.0 1.0
O2 A:GOL501 3.2 51.2 1.0
NH2 A:ARG114 3.3 26.5 1.0
NH2 A:ARG154 3.4 41.0 1.0
C1 A:GOL501 3.4 47.0 1.0
CZ A:ARG154 3.6 39.3 1.0
NH1 A:ARG114 3.8 24.6 1.0
C2 A:GOL501 3.9 48.1 1.0
CZ A:ARG114 4.0 27.7 1.0
CD A:ARG154 4.0 33.8 1.0
CG A:ARG154 4.2 29.5 1.0
O1 A:3PG503 4.4 70.0 1.0
O A:HOH571 4.5 45.6 1.0
O A:HOH555 4.5 41.5 1.0
NH1 A:ARG154 4.9 42.1 1.0

Chlorine binding site 2 out of 2 in 2cun

Go back to Chlorine Binding Sites List in 2cun
Chlorine binding site 2 out of 2 in the Crystal Structure of Phosphoglycerate Kinase From Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Phosphoglycerate Kinase From Pyrococcus Horikoshii OT3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl506

b:68.2
occ:1.00
O3 B:GOL502 2.8 46.8 1.0
NH2 B:ARG114 3.2 23.5 1.0
NE B:ARG154 3.2 43.3 1.0
O2 B:GOL502 3.4 40.2 1.0
NH1 B:ARG114 3.4 21.4 1.0
C3 B:GOL502 3.5 43.1 1.0
NH2 B:ARG154 3.6 46.1 1.0
CZ B:ARG114 3.7 24.5 1.0
CZ B:ARG154 3.8 45.0 1.0
O B:HOH576 4.0 42.6 1.0
C2 B:GOL502 4.1 42.8 1.0
CD B:ARG154 4.2 38.7 1.0
CG B:ARG154 4.4 34.2 1.0
O1 B:3PG504 4.7 59.0 1.0

Reference:

H.Mizutani, N.Kunishima. Crystal Structure of Phosphoglycerate Kinase From Pyrococcus Horikoshii OT3 To Be Published.
Page generated: Thu Jul 10 21:47:07 2025

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