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Chlorine in PDB 2d9r: Structure of Conserved Protein of Unknown Function PG0164 From Porphyromonas Gingivalis [W83]

Protein crystallography data

The structure of Structure of Conserved Protein of Unknown Function PG0164 From Porphyromonas Gingivalis [W83], PDB code: 2d9r was solved by T.A.Binkowski, C.Hatzos, S.Moy, F.Collart, A.Joachimiak, Midwest Centerfor Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.00 / 2.01
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 50.631, 50.631, 68.651, 90.00, 90.00, 120.00
R / Rfree (%) 17.8 / 22.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Conserved Protein of Unknown Function PG0164 From Porphyromonas Gingivalis [W83] (pdb code 2d9r). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Conserved Protein of Unknown Function PG0164 From Porphyromonas Gingivalis [W83], PDB code: 2d9r:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2d9r

Go back to Chlorine Binding Sites List in 2d9r
Chlorine binding site 1 out of 2 in the Structure of Conserved Protein of Unknown Function PG0164 From Porphyromonas Gingivalis [W83]


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Conserved Protein of Unknown Function PG0164 From Porphyromonas Gingivalis [W83] within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl105

b:19.3
occ:0.50
N A:ASP44 3.1 18.4 1.0
CB A:ASP44 3.7 20.0 1.0
CA A:PHE43 3.7 17.3 1.0
CB A:PHE43 3.7 16.9 1.0
C A:PHE43 3.9 18.0 1.0
CA A:ASP44 4.0 18.4 1.0
O A:HOH1322 4.8 46.1 1.0

Chlorine binding site 2 out of 2 in 2d9r

Go back to Chlorine Binding Sites List in 2d9r
Chlorine binding site 2 out of 2 in the Structure of Conserved Protein of Unknown Function PG0164 From Porphyromonas Gingivalis [W83]


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Conserved Protein of Unknown Function PG0164 From Porphyromonas Gingivalis [W83] within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl106

b:25.3
occ:1.00
CG A:ARG53 3.1 22.1 1.0
N A:ARG71 3.2 15.9 1.0
NE A:ARG71 3.2 27.6 1.0
NE A:ARG53 3.2 19.6 1.0
NH2 A:ARG71 3.6 30.6 1.0
CA A:VAL70 3.7 14.3 1.0
CB A:VAL70 3.8 14.6 1.0
CD A:ARG53 3.8 18.9 1.0
O A:HOH1299 3.8 35.0 1.0
CZ A:ARG71 3.9 29.1 1.0
CB A:ARG71 4.0 17.5 1.0
C A:VAL70 4.0 14.8 1.0
CG A:ARG71 4.1 21.3 1.0
CA A:ARG53 4.1 20.3 1.0
CA A:ARG71 4.1 18.3 1.0
CB A:ARG53 4.2 19.9 1.0
N A:ARG53 4.2 20.9 1.0
CZ A:ARG53 4.2 20.7 1.0
CD A:ARG71 4.2 21.9 1.0
NH2 A:ARG53 4.3 21.8 1.0
CG1 A:VAL70 4.3 15.1 1.0
O A:ARG71 4.4 17.0 1.0
C A:GLY52 4.7 22.3 1.0
O A:HOH1274 4.7 15.8 1.0
C A:ARG71 4.7 18.1 1.0
O A:ILE69 4.8 14.4 1.0

Reference:

T.A.Binkowski, C.Hatzos, S.Moy, F.Collart, A.Joachimiak. Conserved Hypothetical Protein PG0164 Frpm Porphyromonas Gingivalis [W83] To Be Published.
Page generated: Thu Jul 10 21:49:40 2025

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