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Chlorine in PDB 2deh: Crystal Structure of TT0972 Protein Form Thermus Thermophilus with Cl(-) Ions

Protein crystallography data

The structure of Crystal Structure of TT0972 Protein Form Thermus Thermophilus with Cl(-) Ions, PDB code: 2deh was solved by E.Inagaki, N.Nakano, A.Shinkai, S.Yokoyama, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.98 / 2.45
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 65.171, 65.171, 202.364, 90.00, 90.00, 90.00
R / Rfree (%) 24.3 / 27.9

Other elements in 2deh:

The structure of Crystal Structure of TT0972 Protein Form Thermus Thermophilus with Cl(-) Ions also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of TT0972 Protein Form Thermus Thermophilus with Cl(-) Ions (pdb code 2deh). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of TT0972 Protein Form Thermus Thermophilus with Cl(-) Ions, PDB code: 2deh:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2deh

Go back to Chlorine Binding Sites List in 2deh
Chlorine binding site 1 out of 2 in the Crystal Structure of TT0972 Protein Form Thermus Thermophilus with Cl(-) Ions


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of TT0972 Protein Form Thermus Thermophilus with Cl(-) Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1002

b:53.0
occ:1.00
NZ F:LYS6 3.2 52.5 1.0
NZ A:LYS6 3.5 45.3 1.0
O F:HOH77 3.8 55.5 1.0
CE F:LYS6 4.0 49.4 1.0
CE A:LYS6 4.1 43.2 1.0
CG1 A:VAL8 4.8 38.0 1.0
CG1 F:VAL8 5.0 36.8 1.0

Chlorine binding site 2 out of 2 in 2deh

Go back to Chlorine Binding Sites List in 2deh
Chlorine binding site 2 out of 2 in the Crystal Structure of TT0972 Protein Form Thermus Thermophilus with Cl(-) Ions


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of TT0972 Protein Form Thermus Thermophilus with Cl(-) Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1003

b:56.6
occ:1.00
NZ B:LYS6 3.2 48.4 1.0
NZ E:LYS6 3.5 56.0 1.0
CE B:LYS6 4.1 43.8 1.0
CE E:LYS6 4.2 52.3 1.0

Reference:

E.Inagaki, N.Nakano, A.Shinkai, S.Yokoyama. Crystal Structure of TT0972 Protein Form Thermus Thermophilus To Be Published.
Page generated: Thu Jul 10 21:50:26 2025

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