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Chlorine in PDB 2dsj: Crystal Structure of Project Id TT0128 From Thermus Thermophilus HB8

Enzymatic activity of Crystal Structure of Project Id TT0128 From Thermus Thermophilus HB8

All present enzymatic activity of Crystal Structure of Project Id TT0128 From Thermus Thermophilus HB8:
2.4.2.2;

Protein crystallography data

The structure of Crystal Structure of Project Id TT0128 From Thermus Thermophilus HB8, PDB code: 2dsj was solved by K.Shimizu, Riken Structural Genomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.78 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 58.828, 76.234, 103.862, 90.00, 91.26, 90.00
R / Rfree (%) 19.8 / 22.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Project Id TT0128 From Thermus Thermophilus HB8 (pdb code 2dsj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Project Id TT0128 From Thermus Thermophilus HB8, PDB code: 2dsj:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2dsj

Go back to Chlorine Binding Sites List in 2dsj
Chlorine binding site 1 out of 2 in the Crystal Structure of Project Id TT0128 From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Project Id TT0128 From Thermus Thermophilus HB8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1002

b:30.6
occ:1.00
NH1 B:ARG11 3.2 24.7 1.0
N A:VAL173 3.4 21.0 1.0
N A:GLU174 3.4 25.1 1.0
O B:HOH1002 3.6 41.3 1.0
NH2 B:ARG8 3.6 31.7 1.0
CB A:VAL173 3.6 23.3 1.0
C A:ALA171 3.7 17.4 1.0
CG A:GLU174 3.7 37.2 1.0
O A:ALA171 3.8 19.7 1.0
CA A:ALA171 3.8 18.9 1.0
NE B:ARG8 3.9 30.1 1.0
CA A:VAL173 3.9 23.6 1.0
CB A:GLU174 4.0 30.6 1.0
N A:THR172 4.0 19.3 1.0
C A:VAL173 4.2 23.9 1.0
CZ B:ARG8 4.2 32.0 1.0
CG2 A:VAL173 4.3 24.8 1.0
CA A:GLU174 4.3 26.4 1.0
CZ B:ARG11 4.4 25.0 1.0
C A:THR172 4.4 21.0 1.0
CB A:ALA171 4.6 19.3 1.0
CA A:THR172 4.6 18.7 1.0
OE2 A:GLU174 4.7 46.1 1.0
CD A:GLU174 4.7 42.6 1.0
NH2 B:ARG11 4.7 26.8 1.0
CG1 A:VAL173 4.8 26.5 1.0
CE2 A:PHE46 5.0 22.1 1.0

Chlorine binding site 2 out of 2 in 2dsj

Go back to Chlorine Binding Sites List in 2dsj
Chlorine binding site 2 out of 2 in the Crystal Structure of Project Id TT0128 From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Project Id TT0128 From Thermus Thermophilus HB8 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1001

b:30.1
occ:1.00
NH1 A:ARG11 3.2 23.0 1.0
OE2 B:GLU174 3.2 43.6 1.0
CG B:GLU174 3.3 38.4 1.0
NH2 A:ARG8 3.3 32.1 1.0
N B:VAL173 3.4 20.4 1.0
N B:GLU174 3.5 25.8 1.0
C B:ALA171 3.5 17.1 1.0
O B:HOH1315 3.6 33.5 1.0
CD B:GLU174 3.7 42.9 1.0
CA B:ALA171 3.7 18.6 1.0
CB B:VAL173 3.8 23.7 1.0
O B:ALA171 3.8 18.6 1.0
N B:THR172 3.9 18.0 1.0
NE A:ARG8 3.9 29.2 1.0
CA B:VAL173 4.0 23.8 1.0
CB B:GLU174 4.0 31.8 1.0
CZ A:ARG8 4.1 31.0 1.0
C B:VAL173 4.3 24.2 1.0
CZ A:ARG11 4.3 21.5 1.0
C B:THR172 4.4 20.4 1.0
CG2 B:VAL173 4.4 23.5 1.0
CA B:GLU174 4.4 26.9 1.0
CB B:ALA171 4.5 19.8 1.0
CA B:THR172 4.5 18.3 1.0
NH2 A:ARG11 4.7 22.8 1.0
O B:HOH1317 4.7 40.5 1.0
N B:ALA171 4.8 20.4 1.0
OE1 B:GLU174 4.9 44.9 1.0
CG1 B:VAL173 4.9 25.0 1.0

Reference:

K.Shimizu, N.Kunishima. Crystal Structure of Project Id TT0128 From Thermus Thermophilus HB8 To Be Published.
Page generated: Thu Jul 10 21:53:20 2025

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