Atomistry » Chlorine » PDB 2dxd-2esw » 2dy5
Atomistry »
  Chlorine »
    PDB 2dxd-2esw »
      2dy5 »

Chlorine in PDB 2dy5: Crystal Structure of Rat Heme Oxygenase-1 in Complex with Heme and 2-[2-(4-Chlorophenyl)Ethyl]-2-[(1H-Imidazol-1-Yl) Methyl]-1,3-Dioxolane

Enzymatic activity of Crystal Structure of Rat Heme Oxygenase-1 in Complex with Heme and 2-[2-(4-Chlorophenyl)Ethyl]-2-[(1H-Imidazol-1-Yl) Methyl]-1,3-Dioxolane

All present enzymatic activity of Crystal Structure of Rat Heme Oxygenase-1 in Complex with Heme and 2-[2-(4-Chlorophenyl)Ethyl]-2-[(1H-Imidazol-1-Yl) Methyl]-1,3-Dioxolane:
1.14.99.3;

Protein crystallography data

The structure of Crystal Structure of Rat Heme Oxygenase-1 in Complex with Heme and 2-[2-(4-Chlorophenyl)Ethyl]-2-[(1H-Imidazol-1-Yl) Methyl]-1,3-Dioxolane, PDB code: 2dy5 was solved by M.Sugishima, H.Takahashi, K.Fukuyama, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.70
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 66.780, 66.780, 121.390, 90.00, 90.00, 120.00
R / Rfree (%) 19.4 / 24.8

Other elements in 2dy5:

The structure of Crystal Structure of Rat Heme Oxygenase-1 in Complex with Heme and 2-[2-(4-Chlorophenyl)Ethyl]-2-[(1H-Imidazol-1-Yl) Methyl]-1,3-Dioxolane also contains other interesting chemical elements:

Iron (Fe) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Rat Heme Oxygenase-1 in Complex with Heme and 2-[2-(4-Chlorophenyl)Ethyl]-2-[(1H-Imidazol-1-Yl) Methyl]-1,3-Dioxolane (pdb code 2dy5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Rat Heme Oxygenase-1 in Complex with Heme and 2-[2-(4-Chlorophenyl)Ethyl]-2-[(1H-Imidazol-1-Yl) Methyl]-1,3-Dioxolane, PDB code: 2dy5:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2dy5

Go back to Chlorine Binding Sites List in 2dy5
Chlorine binding site 1 out of 2 in the Crystal Structure of Rat Heme Oxygenase-1 in Complex with Heme and 2-[2-(4-Chlorophenyl)Ethyl]-2-[(1H-Imidazol-1-Yl) Methyl]-1,3-Dioxolane


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Rat Heme Oxygenase-1 in Complex with Heme and 2-[2-(4-Chlorophenyl)Ethyl]-2-[(1H-Imidazol-1-Yl) Methyl]-1,3-Dioxolane within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:66.8
occ:1.00
 NE A:ARG27 3.2 35.9 1.0
NH2 A:ARG27 3.4 35.0 1.0
CZ A:ARG27 3.8 36.5 1.0
CD1 A:ILE211 3.8 40.0 1.0
CD1 A:LEU208 3.9 34.6 1.0
CG2 A:VAL24 4.2 30.8 1.0
CD A:ARG27 4.3 38.4 1.0
CB A:ARG27 4.9 39.0 1.0
CG2 A:ILE211 4.9 40.5 1.0

Chlorine binding site 2 out of 2 in 2dy5

Go back to Chlorine Binding Sites List in 2dy5
Chlorine binding site 2 out of 2 in the Crystal Structure of Rat Heme Oxygenase-1 in Complex with Heme and 2-[2-(4-Chlorophenyl)Ethyl]-2-[(1H-Imidazol-1-Yl) Methyl]-1,3-Dioxolane


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Rat Heme Oxygenase-1 in Complex with Heme and 2-[2-(4-Chlorophenyl)Ethyl]-2-[(1H-Imidazol-1-Yl) Methyl]-1,3-Dioxolane within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:77.3
occ:1.00
 CL A:224301 0.0 77.3 1.0
C15 A:224301 1.7 75.7 1.0
C13 A:224301 2.7 75.2 1.0
C14 A:224301 2.7 75.9 1.0
CD2 A:PHE37 3.5 62.6 1.0
CE2 A:PHE37 3.6 62.4 1.0
CE2 A:PHE33 3.7 67.8 1.0
CG1 A:VAL50 3.9 43.0 1.0
C12 A:224301 4.0 75.4 1.0
C11 A:224301 4.0 74.2 1.0
CG A:PHE37 4.0 62.7 1.0
CG2 A:VAL50 4.1 42.6 1.0
CZ A:PHE37 4.1 62.6 1.0
CB A:VAL50 4.3 41.4 1.0
CZ A:PHE33 4.4 68.1 1.0
CE A:MET34 4.4 71.7 1.0
C10 A:224301 4.5 74.2 1.0
CD1 A:PHE37 4.6 63.8 1.0
CE1 A:PHE37 4.6 63.3 1.0
CE1 A:PHE47 4.7 40.9 1.0
CD1 A:PHE47 4.7 40.7 1.0
CD2 A:PHE33 4.7 66.2 1.0
CB A:PHE37 4.8 62.9 1.0

Reference:

M.Sugishima, Y.Higashimoto, T.Oishi, H.Takahashi, H.Sakamoto, M.Noguchi, K.Fukuyama. X-Ray Crystallographic and Biochemical Characterization of the Inhibitory Action of An Imidazole-Dioxolane Compound on Heme Oxygenase Biochemistry V. 46 1860 2007.
ISSN: ISSN 0006-2960
PubMed: 17253780
DOI: 10.1021/BI062264P
Page generated: Thu Jul 10 21:56:25 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy