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Chlorine in PDB 2g45: Co-Crystal Structure of Znf Ubp Domain From the Deubiquitinating Enzyme Isopeptidase T (Isot) in Complex with Ubiquitin

Enzymatic activity of Co-Crystal Structure of Znf Ubp Domain From the Deubiquitinating Enzyme Isopeptidase T (Isot) in Complex with Ubiquitin

All present enzymatic activity of Co-Crystal Structure of Znf Ubp Domain From the Deubiquitinating Enzyme Isopeptidase T (Isot) in Complex with Ubiquitin:
3.1.2.15;

Protein crystallography data

The structure of Co-Crystal Structure of Znf Ubp Domain From the Deubiquitinating Enzyme Isopeptidase T (Isot) in Complex with Ubiquitin, PDB code: 2g45 was solved by F.E.Reyes-Turcu, J.R.Horton, J.E.Mullally, A.Heroux, X.Cheng, K.D.Wilkinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 1.99
Space group P 64
Cell size a, b, c (Å), α, β, γ (°) 68.074, 68.074, 225.345, 90.00, 90.00, 120.00
R / Rfree (%) 22.9 / 26.8

Other elements in 2g45:

The structure of Co-Crystal Structure of Znf Ubp Domain From the Deubiquitinating Enzyme Isopeptidase T (Isot) in Complex with Ubiquitin also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Co-Crystal Structure of Znf Ubp Domain From the Deubiquitinating Enzyme Isopeptidase T (Isot) in Complex with Ubiquitin (pdb code 2g45). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Co-Crystal Structure of Znf Ubp Domain From the Deubiquitinating Enzyme Isopeptidase T (Isot) in Complex with Ubiquitin, PDB code: 2g45:

Chlorine binding site 1 out of 1 in 2g45

Go back to Chlorine Binding Sites List in 2g45
Chlorine binding site 1 out of 1 in the Co-Crystal Structure of Znf Ubp Domain From the Deubiquitinating Enzyme Isopeptidase T (Isot) in Complex with Ubiquitin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Co-Crystal Structure of Znf Ubp Domain From the Deubiquitinating Enzyme Isopeptidase T (Isot) in Complex with Ubiquitin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:53.2
occ:1.00
 NE D:ARG205 2.5 36.7 0.5
NH2 A:ARG205 2.5 42.2 0.5
NH2 D:ARG205 2.7 38.9 0.5
O A:HOH454 2.8 33.2 1.0
CZ D:ARG205 3.0 37.7 0.5
CD A:ARG205 3.2 36.5 0.5
CZ A:ARG205 3.3 42.0 0.5
CD D:ARG205 3.7 36.5 0.5
CG A:ARG205 3.8 35.9 0.5
NH1 A:ARG205 3.8 41.3 0.5
CG D:ARG205 3.9 38.1 0.5
O A:TRP197 4.0 32.8 1.0
CB D:LYS198 4.0 34.6 1.0
NE A:ARG205 4.1 41.7 0.5
CG D:ARG205 4.1 36.1 0.5
O D:TRP197 4.2 33.3 1.0
CB A:LYS198 4.2 34.1 1.0
NH1 D:ARG205 4.2 37.7 0.5
C D:TRP197 4.2 36.3 1.0
C A:TRP197 4.2 35.3 1.0
NE A:ARG205 4.4 36.7 0.5
N D:LYS198 4.5 34.9 1.0
CB A:ARG205 4.5 38.0 0.5
CB A:ARG205 4.6 35.9 0.5
CD D:ARG205 4.6 40.8 0.5
N A:LYS198 4.7 34.3 1.0
O A:HOH459 4.7 50.3 1.0
CA D:TRP197 4.7 39.5 1.0
CA D:LYS198 4.8 34.8 1.0
CA A:TRP197 4.8 38.2 1.0
CA A:LYS198 4.9 34.2 1.0
CG D:LYS198 5.0 35.4 1.0
O D:GLY196 5.0 46.2 1.0

Reference:

F.E.Reyes-Turcu, J.R.Horton, J.E.Mullally, A.Heroux, X.Cheng, K.D.Wilkinson. The Ubiquitin Binding Domain Znf Ubp Recognizes the C-Terminal Diglycine Motif of Unanchored Ubiquitin. Cell(Cambridge,Mass.) V. 124 1197 2006.
ISSN: ISSN 0092-8674
PubMed: 16564012
DOI: 10.1016/J.CELL.2006.02.038
Page generated: Sat Jul 20 07:16:50 2024

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