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Chlorine in PDB 2i55: Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana

Enzymatic activity of Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana

All present enzymatic activity of Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana:
5.4.2.8;

Protein crystallography data

The structure of Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana, PDB code: 2i55 was solved by B.J.Smith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.70 / 2.90
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 92.224, 92.224, 172.824, 90.00, 90.00, 120.00
R / Rfree (%) 19.2 / 26.8

Other elements in 2i55:

The structure of Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana also contains other interesting chemical elements:

Magnesium (Mg) 5 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana (pdb code 2i55). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana, PDB code: 2i55:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2i55

Go back to Chlorine Binding Sites List in 2i55
Chlorine binding site 1 out of 2 in the Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1001

b:52.6
occ:0.50
N A:VAL119 3.0 64.6 1.0
O A:VAL119 3.1 64.2 1.0
N A:PHE118 3.2 64.2 1.0
CA A:VAL119 3.7 64.5 1.0
C A:VAL119 3.7 64.1 1.0
CB A:VAL119 3.8 64.8 1.0
C A:PHE118 3.9 64.5 1.0
CA A:PHE118 3.9 64.5 1.0
C A:THR117 4.0 64.1 1.0
CA A:THR117 4.0 64.3 1.0
CB A:PHE118 4.2 64.6 1.0
CD1 A:PHE118 4.5 64.7 1.0
CD2 A:LEU103 4.5 63.4 1.0
N A:THR117 4.6 64.3 1.0
CG2 A:VAL119 4.7 65.0 1.0
CG A:PHE118 4.8 64.7 1.0
CG1 A:VAL119 4.9 65.0 1.0
N A:GLU120 5.0 64.0 1.0

Chlorine binding site 2 out of 2 in 2i55

Go back to Chlorine Binding Sites List in 2i55
Chlorine binding site 2 out of 2 in the Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1002

b:54.2
occ:1.00
N C:PHE118 3.0 62.5 1.0
N B:PHE118 3.1 64.1 1.0
N C:VAL119 3.5 62.3 1.0
N B:VAL119 3.6 64.5 1.0
CA C:THR117 3.7 61.9 1.0
CA B:THR117 3.8 63.3 1.0
C C:THR117 3.8 62.2 1.0
CD2 C:PHE118 3.8 64.6 1.0
CA C:PHE118 3.8 62.6 1.0
CD2 B:PHE118 3.9 63.9 1.0
O C:VAL119 3.9 63.4 1.0
C B:THR117 3.9 63.7 1.0
CB C:PHE118 3.9 63.3 1.0
CA B:PHE118 3.9 64.2 1.0
CB B:PHE118 3.9 64.2 1.0
N B:THR117 4.1 63.2 1.0
C C:PHE118 4.2 62.2 1.0
N C:THR117 4.2 61.9 1.0
O B:VAL119 4.3 65.0 1.0
C B:PHE118 4.3 64.4 1.0
CG C:PHE118 4.3 63.8 1.0
CG B:PHE118 4.4 63.4 1.0
CA C:VAL119 4.4 62.7 1.0
C C:VAL119 4.5 62.9 1.0
CD2 B:LEU103 4.5 62.4 1.0
CB C:VAL119 4.6 62.6 1.0
CA B:VAL119 4.6 64.6 1.0
C B:VAL119 4.7 64.6 1.0
CB B:VAL119 4.9 64.7 1.0
CE2 C:PHE118 4.9 64.4 1.0
CD2 C:LEU103 4.9 62.0 1.0
CE2 B:PHE118 4.9 64.1 1.0
O C:THR117 5.0 62.2 1.0

Reference:

L.Kedzierski, R.L.Malby, B.J.Smith, M.A.Perugini, A.N.Hodder, T.Ilg, P.M.Colman, E.Handman. Structure of Leishmania Mexicana Phosphomannomutase Highlights Similarities with Human Isoforms J.Mol.Biol. V. 363 215 2006.
ISSN: ISSN 0022-2836
PubMed: 16963079
DOI: 10.1016/J.JMB.2006.08.023
Page generated: Sat Jul 20 08:03:40 2024

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