Chlorine in PDB 2j07: Thermus Dna Photolyase with 8-Hdf Antenna Chromophore

All present enzymatic activity of Thermus Dna Photolyase with 8-Hdf Antenna Chromophore:
4.1.99.3;

The structure of Thermus Dna Photolyase with 8-Hdf Antenna Chromophore, PDB code: 2j07 was solved by T.Klar, G.Kaiser, U.Hennecke, T.Carell, A.Batschauer, L.-O.Essen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	18.86 / 1.95
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	112.620, 112.620, 140.262, 90.00, 90.00, 120.00
R / Rfree (%)	16.9 / 21.2

The binding sites of Chlorine atom in the Thermus Dna Photolyase with 8-Hdf Antenna Chromophore (pdb code 2j07). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Thermus Dna Photolyase with 8-Hdf Antenna Chromophore, PDB code: 2j07:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Thermus Dna Photolyase with 8-Hdf Antenna Chromophore


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Thermus Dna Photolyase with 8-Hdf Antenna Chromophore within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1423 b:86.8 occ:1.00 O A:HOH2312 2.2 70.7 1.0 NH1 A:ARG46 3.1 56.3 1.0 O A:HOH2035 3.2 56.5 1.0 NH2 A:ARG336 3.7 61.1 1.0 O A:HOH2309 3.8 72.0 1.0 NE A:ARG336 3.9 60.0 1.0 O A:HOH2040 3.9 56.0 1.0 NE2 A:HIS337 3.9 62.4 1.0 OG1 A:THR42 4.0 42.4 1.0 CZ A:ARG46 4.1 48.9 1.0 CD2 A:HIS337 4.1 60.1 1.0 NH2 A:ARG46 4.2 42.8 1.0 CZ A:ARG336 4.3 61.6 1.0 CB A:THR42 4.3 43.1 1.0 O A:HOH2034 4.8 55.4 1.0

Chlorine binding site 2 out of 3 in the Thermus Dna Photolyase with 8-Hdf Antenna Chromophore


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Thermus Dna Photolyase with 8-Hdf Antenna Chromophore within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1424 b:85.1 occ:1.00 O A:HOH2144 2.7 66.3 1.0 O A:HOH2148 2.9 43.2 1.0 O A:HOH2147 3.0 59.8 1.0 ND1 A:HIS117 3.2 41.4 1.0 CE1 A:HIS117 4.0 41.6 1.0 CA A:HIS117 4.1 33.0 1.0 CG A:HIS117 4.2 34.8 1.0 O A:LEU116 4.3 39.6 1.0 CB A:HIS117 4.4 33.6 1.0 N A:LEU118 4.6 31.6 1.0 C A:HIS117 4.9 34.0 1.0 O A:HOH2032 4.9 62.3 1.0 N A:HIS117 5.0 33.1 1.0

Chlorine binding site 3 out of 3 in the Thermus Dna Photolyase with 8-Hdf Antenna Chromophore


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Thermus Dna Photolyase with 8-Hdf Antenna Chromophore within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1425 b:74.8 occ:1.00 O A:PRO148 2.8 34.7 1.0 C A:PRO148 3.9 36.2 1.0 CD2 A:LEU150 4.1 37.0 1.0 CD A:PRO148 4.2 41.0 1.0 CB A:PRO148 4.3 38.4 1.0 CG A:PRO148 4.4 40.9 1.0 N A:PRO148 4.4 39.8 1.0 CA A:PRO148 4.5 39.8 1.0 CG A:LEU150 4.6 34.7 1.0 C A:PRO149 4.7 34.5 1.0 NH1 A:ARG224 4.7 34.9 1.0 CZ A:ARG224 4.8 36.7 1.0 O A:HOH2175 4.8 44.6 1.0 O A:PRO149 4.8 33.4 1.0 N A:PRO149 4.9 36.0 1.0 NH2 A:ARG224 4.9 31.1 1.0 N A:LEU150 4.9 33.7 1.0 CB A:ALA147 5.0 40.1 1.0 CA A:PRO149 5.0 35.5 1.0

T.Klar, G.Kaiser, U.Hennecke, T.Carell, A.Batschauer, L.-O.Essen. Natural and Non-Natural Antenna Chromophores in the Dna Photolyase From Thermus Thermophilus Chembiochem V. 7 1798 2006.
ISSN: ISSN 1439-4227
PubMed: 17051659
DOI: 10.1002/CBIC.200600206