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Chlorine in PDB 2j9l: Cytoplasmic Domain of the Human Chloride Transporter Clc-5 in Complex with Atp

Protein crystallography data

The structure of Cytoplasmic Domain of the Human Chloride Transporter Clc-5 in Complex with Atp, PDB code: 2j9l was solved by S.Meyer, S.Savaresi, I.C.Forster, R.Dutzler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.30
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 122.328, 148.101, 79.883, 90.00, 90.00, 90.00
R / Rfree (%) 26.3 / 29.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Cytoplasmic Domain of the Human Chloride Transporter Clc-5 in Complex with Atp (pdb code 2j9l). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 10 binding sites of Chlorine where determined in the Cytoplasmic Domain of the Human Chloride Transporter Clc-5 in Complex with Atp, PDB code: 2j9l:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 10 in 2j9l

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Chlorine binding site 1 out of 10 in the Cytoplasmic Domain of the Human Chloride Transporter Clc-5 in Complex with Atp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cytoplasmic Domain of the Human Chloride Transporter Clc-5 in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1753

b:87.1
occ:1.00
 NH1 A:ARG718 3.0 28.1 1.0
NH1 B:ARG718 3.2 23.5 1.0
NH2 A:ARG718 3.7 27.8 1.0
CZ A:ARG718 3.8 27.8 1.0
NE B:ARG630 4.3 21.8 1.0
NE A:ARG630 4.4 26.2 1.0
CZ B:ARG718 4.5 23.4 1.0
CD B:ARG630 4.6 21.7 1.0
CD A:ARG630 4.8 26.3 1.0
NE B:ARG718 4.9 23.1 1.0
CZ B:ARG630 5.0 21.6 1.0

Chlorine binding site 2 out of 10 in 2j9l

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Chlorine binding site 2 out of 10 in the Cytoplasmic Domain of the Human Chloride Transporter Clc-5 in Complex with Atp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Cytoplasmic Domain of the Human Chloride Transporter Clc-5 in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl3001

b:68.8
occ:1.00
 NH2 B:ARG630 3.6 21.3 1.0
ND2 A:ASN716 4.0 24.2 1.0
NH1 B:ARG630 4.1 21.8 1.0
CZ B:ARG630 4.3 21.6 1.0
CG2 B:VAL624 4.4 19.5 1.0
CB A:ASN716 4.6 24.3 1.0
CG1 B:VAL624 4.7 20.0 1.0
CG A:ASN716 4.8 24.3 1.0
NE2 A:HIS715 5.0 25.2 1.0

Chlorine binding site 3 out of 10 in 2j9l

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Chlorine binding site 3 out of 10 in the Cytoplasmic Domain of the Human Chloride Transporter Clc-5 in Complex with Atp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Cytoplasmic Domain of the Human Chloride Transporter Clc-5 in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl3002

b:64.1
occ:1.00
 ND2 B:ASN716 3.8 21.8 1.0
NH1 A:ARG630 3.9 25.9 1.0
NH2 A:ARG630 4.2 26.2 1.0
CZ A:ARG630 4.5 25.9 1.0
CB B:ASN716 4.7 21.8 1.0
CG B:ASN716 4.7 21.8 1.0
CG2 A:VAL624 4.7 24.7 1.0
NH2 B:ARG718 4.9 24.0 1.0
NE2 B:HIS715 4.9 25.4 1.0

Chlorine binding site 4 out of 10 in 2j9l

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Chlorine binding site 4 out of 10 in the Cytoplasmic Domain of the Human Chloride Transporter Clc-5 in Complex with Atp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Cytoplasmic Domain of the Human Chloride Transporter Clc-5 in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1756

b:0.4
occ:1.00
 NH1 D:ARG630 3.1 22.6 1.0
ND2 C:ASN716 3.6 23.8 1.0
CB C:ASN716 3.7 23.5 1.0
NH2 D:ARG630 3.9 22.9 1.0
CZ D:ARG630 4.0 22.6 1.0
NH2 C:ARG718 4.0 22.9 1.0
CG C:ASN716 4.2 23.7 1.0
NE2 C:HIS715 4.3 24.8 1.0
CG2 D:VAL624 4.4 21.3 1.0
CD2 C:HIS715 4.5 24.7 1.0
O C:ASN716 4.8 22.7 1.0

Chlorine binding site 5 out of 10 in 2j9l

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Chlorine binding site 5 out of 10 in the Cytoplasmic Domain of the Human Chloride Transporter Clc-5 in Complex with Atp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Cytoplasmic Domain of the Human Chloride Transporter Clc-5 in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl1754

b:84.0
occ:1.00
 NH1 D:ARG718 3.0 27.3 1.0
NH1 C:ARG718 3.7 22.4 1.0
CZ D:ARG718 3.9 27.0 1.0
NH2 D:ARG718 4.0 27.3 1.0
NE C:ARG630 4.3 23.8 1.0
NE D:ARG630 4.4 22.3 1.0
CZ C:ARG718 4.7 22.6 1.0
CD C:ARG630 4.8 23.5 1.0
CD D:ARG630 4.8 22.1 1.0

Chlorine binding site 6 out of 10 in 2j9l

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Chlorine binding site 6 out of 10 in the Cytoplasmic Domain of the Human Chloride Transporter Clc-5 in Complex with Atp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Cytoplasmic Domain of the Human Chloride Transporter Clc-5 in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl1755

b:51.3
occ:1.00
 NE D:ARG589 3.4 23.6 1.0
NH1 D:ARG589 3.5 23.6 1.0
CB D:ARG589 3.7 24.4 1.0
CZ D:ARG589 3.9 23.2 1.0
N D:ARG590 4.0 25.5 1.0
ND2 D:ASN591 4.1 26.3 1.0
CG D:ARG589 4.3 24.2 1.0
NE D:ARG590 4.4 27.8 1.0
CD D:ARG589 4.4 23.9 1.0
CA D:ARG589 4.4 24.7 1.0
CB D:ARG590 4.5 26.3 1.0
C D:ARG589 4.7 25.1 1.0
CG D:ARG590 4.8 26.9 1.0
CA D:ARG590 4.9 26.0 1.0
NH2 D:ARG590 4.9 28.1 1.0

Chlorine binding site 7 out of 10 in 2j9l

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Chlorine binding site 7 out of 10 in the Cytoplasmic Domain of the Human Chloride Transporter Clc-5 in Complex with Atp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Cytoplasmic Domain of the Human Chloride Transporter Clc-5 in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl3001

b:70.6
occ:1.00
 NH1 C:ARG630 3.4 24.0 1.0
ND2 D:ASN716 3.5 21.7 1.0
O D:HOH2050 3.6 72.2 1.0
NH2 C:ARG630 4.0 23.9 1.0
CB D:ASN716 4.0 22.2 1.0
CZ C:ARG630 4.2 23.8 1.0
NE2 D:HIS715 4.3 25.0 1.0
CG D:ASN716 4.3 21.7 1.0
CG2 C:VAL624 4.4 20.6 1.0
CD2 D:HIS715 4.5 24.8 1.0

Chlorine binding site 8 out of 10 in 2j9l

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Chlorine binding site 8 out of 10 in the Cytoplasmic Domain of the Human Chloride Transporter Clc-5 in Complex with Atp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Cytoplasmic Domain of the Human Chloride Transporter Clc-5 in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl1753

b:99.7
occ:1.00
 NH2 E:ARG630 2.9 32.2 1.0
CZ E:ARG630 3.8 31.9 1.0
NH1 E:ARG630 3.9 32.0 1.0
ND2 F:ASN716 4.0 32.9 1.0
CB F:ASN716 4.5 33.0 1.0
CD2 F:HIS715 4.7 32.6 1.0
CG2 E:VAL624 4.8 26.6 1.0
CG F:ASN716 4.8 33.0 1.0
NE2 F:HIS715 4.8 32.5 1.0

Chlorine binding site 9 out of 10 in 2j9l

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Chlorine binding site 9 out of 10 in the Cytoplasmic Domain of the Human Chloride Transporter Clc-5 in Complex with Atp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Cytoplasmic Domain of the Human Chloride Transporter Clc-5 in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl1751

b:0.9
occ:1.00
 NH2 F:ARG630 3.4 52.4 1.0
CZ F:ARG630 3.7 52.4 1.0
NE F:ARG630 4.1 52.2 1.0
NH2 F:ARG718 4.2 36.4 1.0
NH1 F:ARG630 4.3 52.5 1.0
NH1 F:ARG718 4.5 36.3 1.0
CB F:SER628 4.7 53.0 1.0
CZ F:ARG718 4.8 36.3 1.0

Chlorine binding site 10 out of 10 in 2j9l

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Chlorine binding site 10 out of 10 in the Cytoplasmic Domain of the Human Chloride Transporter Clc-5 in Complex with Atp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Cytoplasmic Domain of the Human Chloride Transporter Clc-5 in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl3001

b:80.2
occ:1.00
 O E:HOH2030 4.0 67.5 1.0
OE1 F:GLN600 4.4 95.5 1.0
CG1 F:VAL624 4.5 59.2 1.0

Reference:

S.Meyer, S.Savaresi, I.C.Forster, R.Dutzler. Nucleotide Recognition By the Cytoplasmic Domain of the Human Chloride Transporter Clc-5 Nat.Struct.Mol.Biol. V. 14 60 2006.
ISSN: ISSN 1545-9993
PubMed: 17195847
DOI: 10.1038/NSMB1188
Page generated: Thu Jul 10 23:05:03 2025

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