Atomistry » Chlorine » PDB 2j6w-2jh6 » 2jaf
Atomistry »
  Chlorine »
    PDB 2j6w-2jh6 »
      2jaf »

Chlorine in PDB 2jaf: Ground State of Halorhodopsin T203V

Protein crystallography data

The structure of Ground State of Halorhodopsin T203V, PDB code: 2jaf was solved by W.Gmelin, K.Zeth, R.Efremov, J.Heberle, J.Tittor, D.Oesterhelt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.70
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 94.473, 94.473, 157.137, 90.00, 90.00, 120.00
R / Rfree (%) 23.8 / 26.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Ground State of Halorhodopsin T203V (pdb code 2jaf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Ground State of Halorhodopsin T203V, PDB code: 2jaf:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2jaf

Go back to Chlorine Binding Sites List in 2jaf
Chlorine binding site 1 out of 2 in the Ground State of Halorhodopsin T203V


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Ground State of Halorhodopsin T203V within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:25.6
occ:1.00
O A:HOH2026 3.0 38.6 1.0
OG1 A:THR111 3.1 23.4 0.5
OG A:SER115 3.1 26.4 1.0
O A:HOH2058 3.1 25.8 1.0
CG2 A:THR111 3.4 21.7 0.5
CB A:SER115 3.5 24.2 1.0
CE A:LYS242 3.5 26.8 1.0
NZ A:LYS242 3.7 25.6 1.0
CB A:THR111 3.8 23.9 0.5
CB A:SER76 3.8 22.5 1.0
CB A:THR111 3.8 23.6 0.5
CD1 A:TRP112 3.9 20.9 1.0
O A:THR111 4.0 21.6 0.5
C A:THR111 4.1 21.9 0.5
O A:THR111 4.1 21.5 0.5
C A:THR111 4.1 22.0 0.5
CA A:SER73 4.1 21.6 1.0
OG A:SER76 4.1 25.1 1.0
N A:TRP112 4.3 22.3 1.0
CG1 A:VAL72 4.3 20.7 1.0
O A:VAL72 4.4 22.4 1.0
O A:HOH2012 4.5 45.8 1.0
N A:SER73 4.5 21.0 1.0
CA A:TRP112 4.5 21.4 1.0
C A:VAL72 4.6 21.4 1.0
NE1 A:TRP112 4.6 20.3 1.0
CA A:THR111 4.6 23.1 0.5
CA A:THR111 4.6 23.4 0.5
O A:HOH2059 4.7 22.5 1.0
C15 A:RET900 4.7 24.5 1.0
CB A:SER73 4.8 24.1 1.0
CD A:LYS242 4.8 25.2 1.0
CA A:SER115 4.9 23.9 1.0
OG A:SER73 5.0 24.9 1.0

Chlorine binding site 2 out of 2 in 2jaf

Go back to Chlorine Binding Sites List in 2jaf
Chlorine binding site 2 out of 2 in the Ground State of Halorhodopsin T203V


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Ground State of Halorhodopsin T203V within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:32.7
occ:1.00
NH2 A:ARG24 3.1 34.5 1.0
NE2 A:GLN105 3.2 25.3 1.0
NH1 A:ARG103 3.5 30.2 1.0
NE A:ARG24 3.5 37.4 1.0
CD A:ARG103 3.7 28.7 1.0
CZ A:ARG24 3.8 38.6 1.0
CD2 A:LEU29 3.9 23.9 1.0
CG A:GLN105 3.9 25.6 1.0
CD1 A:LEU29 4.0 26.7 1.0
CG A:LEU29 4.0 26.3 1.0
CD A:GLN105 4.1 27.1 1.0
CG2 A:VAL86 4.1 26.8 1.0
CG1 A:VAL86 4.1 25.9 1.0
CD1 A:LEU33 4.1 21.2 1.0
CZ A:ARG103 4.4 30.1 1.0
CG A:ARG103 4.4 30.0 1.0
NE A:ARG103 4.5 30.4 1.0
CB A:VAL86 4.7 27.2 1.0
O A:LEU80 4.8 20.9 1.0
CD A:ARG24 4.8 41.0 1.0

Reference:

W.Gmelin, K.Zeth, R.Efremov, J.Heberle, J.Tittor, D.Oesterhelt. The Crystal Structure of the L1 Intermediate of Halorhodopsin at 1.9 Angstroms Resolution. Photochem. Photobiol. V. 83 369 2007.
ISSN: ISSN 0031-8655
PubMed: 17117890
DOI: 10.1562/2006-06-23-RA-947
Page generated: Thu Jul 10 23:05:29 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy