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Chlorine in PDB 2jeb: Structure of A 9-Subunit Archaeal Exosome Bound to Mn Ions

Protein crystallography data

The structure of Structure of A 9-Subunit Archaeal Exosome Bound to Mn Ions, PDB code: 2jeb was solved by E.Lorentzen, E.Conti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.54 / 2.4
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 133.640, 133.640, 133.640, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 25.8

Other elements in 2jeb:

The structure of Structure of A 9-Subunit Archaeal Exosome Bound to Mn Ions also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of A 9-Subunit Archaeal Exosome Bound to Mn Ions (pdb code 2jeb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structure of A 9-Subunit Archaeal Exosome Bound to Mn Ions, PDB code: 2jeb:

Chlorine binding site 1 out of 1 in 2jeb

Go back to Chlorine Binding Sites List in 2jeb
Chlorine binding site 1 out of 1 in the Structure of A 9-Subunit Archaeal Exosome Bound to Mn Ions


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of A 9-Subunit Archaeal Exosome Bound to Mn Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl301

b:52.9
occ:1.00
O B:HOH2033 3.1 42.1 1.0
O B:HOH2016 3.2 42.1 1.0
NE B:ARG139 3.2 47.3 1.0
N B:SER138 3.2 45.8 1.0
N B:ARG139 3.4 45.7 1.0
N B:GLY137 3.6 45.8 1.0
C B:GLY137 3.6 45.4 1.0
CA B:GLY137 3.6 45.5 1.0
OG B:SER138 3.8 46.3 1.0
CG B:ARG139 3.8 45.8 1.0
NH2 B:ARG139 3.9 46.5 1.0
NH1 B:ARG99 3.9 60.4 1.0
CB B:ARG139 4.0 45.9 1.0
CZ B:ARG139 4.0 46.2 1.0
NH2 B:ARG99 4.0 56.7 1.0
CD B:ARG139 4.1 45.8 1.0
CA B:SER138 4.1 46.0 1.0
O B:HOH2034 4.2 30.1 1.0
C B:SER138 4.2 46.0 1.0
O B:HOH2046 4.2 50.2 1.0
CA B:ARG139 4.3 46.0 1.0
CZ B:ARG99 4.4 56.9 1.0
O B:GLY137 4.5 45.5 1.0
CB B:SER138 4.5 45.9 1.0
O B:HOH2047 4.7 33.6 1.0
C B:ALA136 4.7 45.9 1.0
CD1 B:LEU103 4.9 46.3 1.0
OH B:TYR81 5.0 47.5 1.0

Reference:

E.Lorentzen, A.Dziembowski, D.Lindner, B.Seraphin, E.Conti. Rna Channelling By the Archaeal Exosome. Embo Rep. V. 8 470 2007.
ISSN: ISSN 1469-221X
PubMed: 17380186
DOI: 10.1038/SJ.EMBOR.7400945
Page generated: Sat Jul 20 08:50:59 2024

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