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Chlorine in PDB 2ji4: Human Phosphoribosylpyrophosphate Synthetase - Associated Protein 41 (PAP41)

Protein crystallography data

The structure of Human Phosphoribosylpyrophosphate Synthetase - Associated Protein 41 (PAP41), PDB code: 2ji4 was solved by M.Moche, L.Lehtio, C.Arrowsmith, H.Berglund, R.Busam, R.Collins, L.G.Dahlgren, A.Edwards, S.Flodin, A.Flores, S.Graslund, M.Hammarstrom, B.M.Hallberg, L.Holmberg-Schiavone, I.Johansson, T.Karlberg, T.Kotenyova, T.Nyman, D.Ogg, C.Persson, J.Sagemark, P.Stenmark, M.Sundstrom, A.G.Thorsell, S.Van Den Berg, J.Weigelt, P.Nordlund, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.73 / 2.55
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 104.400, 104.400, 192.000, 90.00, 90.00, 120.00
R / Rfree (%) 20.6 / 27.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Human Phosphoribosylpyrophosphate Synthetase - Associated Protein 41 (PAP41) (pdb code 2ji4). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Human Phosphoribosylpyrophosphate Synthetase - Associated Protein 41 (PAP41), PDB code: 2ji4:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2ji4

Go back to Chlorine Binding Sites List in 2ji4
Chlorine binding site 1 out of 2 in the Human Phosphoribosylpyrophosphate Synthetase - Associated Protein 41 (PAP41)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Human Phosphoribosylpyrophosphate Synthetase - Associated Protein 41 (PAP41) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1369

b:44.5
occ:1.00
N A:ALA165 3.0 36.1 1.0
O A:HOH2031 3.2 33.0 1.0
N A:SER166 3.4 37.8 1.0
OD2 A:ASP146 3.5 37.2 1.0
CG A:ASP146 3.7 36.8 1.0
O A:HOH2010 3.7 24.0 1.0
NH2 A:ARG195 3.7 51.7 1.0
CB A:ASP146 3.8 30.0 1.0
NH1 A:ARG164 3.8 47.0 1.0
OG A:SER166 3.9 41.3 1.0
CA A:ALA165 3.9 37.0 1.0
CA A:ARG164 3.9 40.9 1.0
C A:ARG164 3.9 36.1 1.0
CD A:ARG164 3.9 50.1 1.0
CB A:ALA165 4.0 37.6 1.0
C A:ALA165 4.1 40.2 1.0
CZ A:ARG195 4.1 54.2 1.0
CB A:SER166 4.1 38.1 1.0
CA A:SER166 4.3 39.1 1.0
NH1 A:ARG195 4.3 55.1 1.0
OD1 A:ASP146 4.3 39.6 1.0
OG1 A:THR298 4.4 32.7 1.0
CB A:ARG164 4.5 45.7 1.0
O A:LEU163 4.6 32.6 1.0
CA A:ASP146 4.7 27.2 1.0
CZ A:ARG164 4.8 51.9 1.0
NE A:ARG195 4.8 55.7 1.0
NE A:ARG164 4.8 53.0 1.0
CG A:ARG164 4.9 47.6 1.0

Chlorine binding site 2 out of 2 in 2ji4

Go back to Chlorine Binding Sites List in 2ji4
Chlorine binding site 2 out of 2 in the Human Phosphoribosylpyrophosphate Synthetase - Associated Protein 41 (PAP41)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Human Phosphoribosylpyrophosphate Synthetase - Associated Protein 41 (PAP41) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1370

b:41.6
occ:1.00
O A:HOH2020 3.3 47.0 1.0
N A:GLN116 3.3 32.7 1.0
CD2 A:HIS148 3.4 27.9 1.0
OE1 A:GLN149 3.5 24.8 1.0
CB A:GLN116 3.5 33.0 1.0
NE2 A:HIS148 3.8 26.6 1.0
CA A:GLN116 4.0 36.2 1.0
CG A:GLN149 4.0 20.5 1.0
CD A:GLN149 4.1 24.0 1.0
C A:LYS115 4.2 31.6 1.0
O A:SER114 4.3 18.5 1.0
CA A:LYS115 4.4 32.4 1.0
CG A:HIS148 4.7 27.9 1.0

Reference:

M.Moche, L.Lehtio, C.Arrowsmith, H.Berglund, R.Busam, R.Collins, L.G.Dahlgren, A.Edwards, S.Flodin, A.Flores, S.Graslund, M.Hammarstrom, B.M.Hallberg, L.Holmberg-Schiavone, I.Johansson, T.Karlberg, T.Kotenyova, T.Nyman, D.Ogg, C.Persson, J.Sagemark, P.Stenmark, M.Sundstrom, A.G.Thorsell, S.Van Den Berg, J.Weigelt, P.Nordlund. Human Phosphoribosylpyrophosphate Synthetase - Associated Protein 41 (PAP41) To Be Published.
Page generated: Thu Jul 10 23:08:50 2025

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