Atomistry » Chlorine » PDB 2kug-2nwh » 2nv2
Atomistry »
  Chlorine »
    PDB 2kug-2nwh »
      2nv2 »

Chlorine in PDB 2nv2: Structure of the Plp Synthase Complex PDX1/2 (Yaad/E) From Bacillus Subtilis

Protein crystallography data

The structure of Structure of the Plp Synthase Complex PDX1/2 (Yaad/E) From Bacillus Subtilis, PDB code: 2nv2 was solved by M.Strohmeier, I.Tews, I.Sinning, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.12
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 93.507, 259.009, 144.962, 90.00, 92.13, 90.00
R / Rfree (%) 14.6 / 19.8

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Chlorine atom in the Structure of the Plp Synthase Complex PDX1/2 (Yaad/E) From Bacillus Subtilis (pdb code 2nv2). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 12 binding sites of Chlorine where determined in the Structure of the Plp Synthase Complex PDX1/2 (Yaad/E) From Bacillus Subtilis, PDB code: 2nv2:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 12 in 2nv2

Go back to Chlorine Binding Sites List in 2nv2
Chlorine binding site 1 out of 12 in the Structure of the Plp Synthase Complex PDX1/2 (Yaad/E) From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the Plp Synthase Complex PDX1/2 (Yaad/E) From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl6001

b:73.3
occ:1.00
 O O:HOH6244 2.3 63.6 1.0
O O:HOH6194 2.4 56.2 1.0
O A:HOH6174 3.1 54.1 1.0
NH2 A:ARG137 3.2 33.8 1.0
NH1 A:ARG138 3.2 34.1 1.0
NE A:ARG137 3.2 32.3 1.0
NH2 A:ARG138 3.7 36.0 1.0
CZ A:ARG137 3.7 34.4 1.0
CZ A:ARG138 3.9 34.7 1.0
NZ O:LYS187 4.1 41.8 1.0
CG A:GLU134 4.2 40.3 1.0
CD A:ARG137 4.4 34.0 1.0
OE2 A:GLU134 4.6 47.3 1.0
O O:HOH6212 4.6 58.9 1.0
CD A:GLU134 4.7 40.6 1.0
CB A:GLU134 4.7 37.8 1.0
O O:HOH6269 4.8 66.5 1.0
CA A:GLU134 4.8 37.3 1.0
CD O:LYS187 4.8 35.9 1.0
CE O:LYS187 4.9 37.4 1.0

Chlorine binding site 2 out of 12 in 2nv2

Go back to Chlorine Binding Sites List in 2nv2
Chlorine binding site 2 out of 12 in the Structure of the Plp Synthase Complex PDX1/2 (Yaad/E) From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the Plp Synthase Complex PDX1/2 (Yaad/E) From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl6005

b:75.0
occ:1.00
 O C:HOH6144 2.4 47.2 1.0
O C:HOH6284 2.6 67.9 1.0
O C:HOH6212 2.8 57.5 1.0
NE C:ARG137 3.1 31.9 1.0
NH2 C:ARG137 3.3 32.8 1.0
NH1 C:ARG138 3.4 31.4 1.0
CZ C:ARG137 3.6 31.8 1.0
NH2 C:ARG138 3.7 30.9 1.0
NZ M:LYS187 4.0 43.7 1.0
CZ C:ARG138 4.1 30.0 1.0
CD C:ARG137 4.2 31.4 1.0
O C:HOH6374 4.3 92.7 1.0
CG C:GLU134 4.3 36.5 1.0
CD M:LYS187 4.6 35.1 1.0
CE M:LYS187 4.6 37.9 1.0
O C:HOH6250 4.6 62.5 1.0
O C:HOH6240 4.7 61.2 1.0
NH1 C:ARG137 4.9 33.2 1.0
O M:HOH6133 5.0 46.9 1.0
O M:HOH6118 5.0 44.8 1.0

Chlorine binding site 3 out of 12 in 2nv2

Go back to Chlorine Binding Sites List in 2nv2
Chlorine binding site 3 out of 12 in the Structure of the Plp Synthase Complex PDX1/2 (Yaad/E) From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of the Plp Synthase Complex PDX1/2 (Yaad/E) From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl6009

b:67.8
occ:1.00
 O W:HOH6353 2.1 78.9 1.0
O E:HOH6345 2.4 79.7 1.0
O E:HOH6142 2.6 47.2 1.0
O E:HOH6150 2.8 47.9 1.0
NE E:ARG137 3.1 31.0 1.0
NH1 E:ARG138 3.2 33.5 1.0
NH2 E:ARG137 3.3 35.0 1.0
O E:HOH6299 3.5 69.8 1.0
NH2 E:ARG138 3.5 35.2 1.0
CZ E:ARG137 3.7 32.0 1.0
CZ E:ARG138 3.8 33.9 1.0
NZ W:LYS187 4.0 40.3 1.0
CD E:ARG137 4.3 30.8 1.0
CG E:GLU134 4.3 36.4 1.0
CD W:LYS187 4.6 34.9 1.0
CE W:LYS187 4.7 37.2 1.0
O E:HOH6242 4.9 62.0 1.0
CA E:GLU134 4.9 34.4 1.0
CB E:ARG137 4.9 31.6 1.0
CB E:GLU134 4.9 34.5 1.0
O E:HOH6237 4.9 61.1 1.0
NH1 E:ARG137 5.0 34.1 1.0
O W:HOH6221 5.0 55.5 1.0

Chlorine binding site 4 out of 12 in 2nv2

Go back to Chlorine Binding Sites List in 2nv2
Chlorine binding site 4 out of 12 in the Structure of the Plp Synthase Complex PDX1/2 (Yaad/E) From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of the Plp Synthase Complex PDX1/2 (Yaad/E) From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl6013

b:74.2
occ:1.00
 O G:HOH6293 2.6 69.6 1.0
NE G:ARG137 3.1 32.4 1.0
NH2 G:ARG137 3.4 32.8 1.0
NH1 G:ARG138 3.4 33.6 1.0
O U:HOH6183 3.5 56.0 1.0
CZ G:ARG137 3.7 32.9 1.0
NH2 G:ARG138 3.7 32.4 1.0
NZ U:LYS187 3.7 43.4 1.0
CZ G:ARG138 4.0 32.3 1.0
CD G:ARG137 4.2 31.6 1.0
CG G:GLU134 4.5 36.5 1.0
CD U:LYS187 4.6 34.3 1.0
CE U:LYS187 4.7 38.0 1.0
O G:HOH6274 4.8 66.0 1.0
O U:HOH6065 4.9 36.8 1.0
CB G:ARG137 4.9 32.1 1.0
NH1 G:ARG137 5.0 32.8 1.0

Chlorine binding site 5 out of 12 in 2nv2

Go back to Chlorine Binding Sites List in 2nv2
Chlorine binding site 5 out of 12 in the Structure of the Plp Synthase Complex PDX1/2 (Yaad/E) From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Structure of the Plp Synthase Complex PDX1/2 (Yaad/E) From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Cl6017

b:65.7
occ:1.00
 O S:HOH6347 2.2 92.5 1.0
O S:HOH6181 2.6 56.5 1.0
O S:HOH6287 2.7 74.4 1.0
O I:HOH6212 2.8 57.5 1.0
NH1 I:ARG138 3.1 32.9 1.0
NE I:ARG137 3.1 30.4 1.0
NH2 I:ARG138 3.4 33.0 1.0
NH2 I:ARG137 3.4 33.7 1.0
CZ I:ARG138 3.7 30.3 1.0
CZ I:ARG137 3.7 33.4 1.0
NZ S:LYS187 4.2 43.0 1.0
CD I:ARG137 4.2 31.6 1.0
O I:HOH6325 4.3 79.3 1.0
CG I:GLU134 4.5 37.7 1.0
O S:HOH6198 4.7 59.0 1.0
CB I:ARG137 4.7 30.4 1.0
CD S:LYS187 4.9 34.6 1.0
CA I:GLU134 4.9 33.3 1.0
CB I:GLU134 4.9 34.4 1.0
CE S:LYS187 5.0 35.7 1.0
OE2 I:GLU134 5.0 45.3 1.0
NE I:ARG138 5.0 33.3 1.0

Chlorine binding site 6 out of 12 in 2nv2

Go back to Chlorine Binding Sites List in 2nv2
Chlorine binding site 6 out of 12 in the Structure of the Plp Synthase Complex PDX1/2 (Yaad/E) From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Structure of the Plp Synthase Complex PDX1/2 (Yaad/E) From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Cl6021

b:70.1
occ:1.00
 O K:HOH6236 2.5 65.6 1.0
O K:HOH6130 3.1 48.6 1.0
NE K:ARG137 3.2 30.3 1.0
NH2 K:ARG137 3.3 34.1 1.0
NH1 K:ARG138 3.3 33.9 1.0
CZ K:ARG137 3.7 33.3 1.0
NH2 K:ARG138 3.7 30.6 1.0
NZ Q:LYS187 3.9 41.8 1.0
CZ K:ARG138 4.0 30.2 1.0
O K:HOH6324 4.2 93.2 1.0
CD K:ARG137 4.3 30.7 1.0
CG K:GLU134 4.3 37.8 1.0
O K:HOH6288 4.4 74.4 1.0
CD Q:LYS187 4.7 34.0 1.0
CE Q:LYS187 4.8 34.7 1.0
CB K:GLU134 4.9 34.8 1.0
CD K:GLU134 4.9 39.4 1.0
OE2 K:GLU134 4.9 45.0 1.0

Chlorine binding site 7 out of 12 in 2nv2

Go back to Chlorine Binding Sites List in 2nv2
Chlorine binding site 7 out of 12 in the Structure of the Plp Synthase Complex PDX1/2 (Yaad/E) From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Structure of the Plp Synthase Complex PDX1/2 (Yaad/E) From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Cl6025

b:65.7
occ:1.00
 O M:HOH6174 2.7 52.2 1.0
O M:HOH6279 2.7 66.1 1.0
NE M:ARG137 3.1 26.8 1.0
NH2 M:ARG137 3.2 30.1 1.0
NH1 M:ARG138 3.3 29.2 1.0
CZ M:ARG137 3.6 28.8 1.0
NH2 M:ARG138 3.7 27.9 1.0
NZ C:LYS187 3.9 38.0 1.0
CZ M:ARG138 4.0 29.9 1.0
CD M:ARG137 4.2 29.1 1.0
CG M:GLU134 4.3 36.3 1.0
O M:HOH6317 4.4 74.3 1.0
CD C:LYS187 4.7 30.5 1.0
CE C:LYS187 4.9 33.1 1.0
OE2 M:GLU134 4.9 44.0 1.0
CB M:ARG137 4.9 29.8 1.0
NH1 M:ARG137 4.9 32.0 1.0
O C:HOH6100 5.0 42.0 1.0

Chlorine binding site 8 out of 12 in 2nv2

Go back to Chlorine Binding Sites List in 2nv2
Chlorine binding site 8 out of 12 in the Structure of the Plp Synthase Complex PDX1/2 (Yaad/E) From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Structure of the Plp Synthase Complex PDX1/2 (Yaad/E) From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Cl6029

b:83.4
occ:1.00
 O O:HOH6307 2.4 72.8 1.0
O A:HOH6254 3.3 68.2 1.0
NE O:ARG137 3.4 32.7 1.0
O O:HOH6140 3.4 48.8 1.0
NH2 O:ARG137 3.5 35.2 1.0
NH1 O:ARG138 3.5 29.5 1.0
NZ A:LYS187 3.8 43.1 1.0
NH2 O:ARG138 3.8 31.1 1.0
CZ O:ARG137 3.9 34.7 1.0
CZ O:ARG138 4.2 29.7 1.0
CD O:ARG137 4.5 31.9 1.0
CG O:GLU134 4.6 37.6 1.0
CD A:LYS187 4.6 35.1 1.0
CE A:LYS187 4.7 38.8 1.0
O A:HOH6123 4.9 45.7 1.0
OE2 O:GLU134 5.0 41.5 1.0

Chlorine binding site 9 out of 12 in 2nv2

Go back to Chlorine Binding Sites List in 2nv2
Chlorine binding site 9 out of 12 in the Structure of the Plp Synthase Complex PDX1/2 (Yaad/E) From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Structure of the Plp Synthase Complex PDX1/2 (Yaad/E) From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cl6033

b:79.2
occ:1.00
 O K:HOH6320 2.0 88.9 1.0
O K:HOH6188 2.3 57.9 1.0
NE Q:ARG137 3.2 30.7 1.0
NH1 Q:ARG138 3.2 30.1 1.0
NH2 Q:ARG137 3.3 34.0 1.0
CZ Q:ARG137 3.7 31.7 1.0
NH2 Q:ARG138 3.7 30.9 1.0
O Q:HOH6295 3.8 69.9 1.0
NZ K:LYS187 3.8 41.5 1.0
CZ Q:ARG138 4.0 30.4 1.0
CG Q:GLU134 4.2 37.4 1.0
CD Q:ARG137 4.3 31.2 1.0
O K:HOH6194 4.6 58.9 1.0
OE2 Q:GLU134 4.7 42.1 1.0
CB Q:GLU134 4.8 34.9 1.0
CD Q:GLU134 4.8 37.8 1.0
CD K:LYS187 4.8 34.0 1.0
CA Q:GLU134 4.9 33.8 1.0
CE K:LYS187 4.9 35.0 1.0
CB Q:ARG137 4.9 30.1 1.0
NH1 Q:ARG137 5.0 30.5 1.0

Chlorine binding site 10 out of 12 in 2nv2

Go back to Chlorine Binding Sites List in 2nv2
Chlorine binding site 10 out of 12 in the Structure of the Plp Synthase Complex PDX1/2 (Yaad/E) From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Structure of the Plp Synthase Complex PDX1/2 (Yaad/E) From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
S:Cl6037

b:72.8
occ:1.00
 O S:HOH6243 2.5 66.4 1.0
O S:HOH6321 2.5 81.9 1.0
O S:HOH6156 2.7 52.9 1.0
O S:HOH6161 2.7 53.7 1.0
NE S:ARG137 3.1 31.3 1.0
NH2 S:ARG137 3.4 34.8 1.0
NH1 S:ARG138 3.5 36.8 1.0
CZ S:ARG137 3.7 32.9 1.0
NH2 S:ARG138 3.8 35.8 1.0
NZ I:LYS187 4.0 43.8 1.0
CZ S:ARG138 4.1 34.4 1.0
CD S:ARG137 4.2 33.6 1.0
CG S:GLU134 4.5 39.4 1.0
O S:HOH6326 4.6 84.2 1.0
CE I:LYS187 4.7 40.4 1.0
CD I:LYS187 4.8 36.8 1.0
O S:HOH6204 4.8 59.4 1.0
OE2 S:GLU134 4.8 49.5 1.0

Reference:

M.Strohmeier, T.Raschle, J.Mazurkiewicz, K.Rippe, I.Sinning, T.B.Fitzpatrick, I.Tews. Structure of A Bacterial Pyridoxal 5'-Phosphate Synthase Complex Proc.Natl.Acad.Sci.Usa V. 103 19284 2006.
ISSN: ISSN 0027-8424
PubMed: 17159152
DOI: 10.1073/PNAS.0604950103
Page generated: Thu Jul 10 23:20:39 2025

Last articles

Mg in 5SIW
Mg in 5SIV
Mg in 5SIX
Mg in 5SIU
Mg in 5SIT
Mg in 5SIR
Mg in 5SIQ
Mg in 5SIS
Mg in 5SIP
Mg in 5SIO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy