Chlorine in PDB 2o6f: Structure of Metal- Free RTP34 From Treponema Pallidum

The structure of Structure of Metal- Free RTP34 From Treponema Pallidum, PDB code: 2o6f was solved by M.Machius, C.A.Brautigam, R.K.Deka, D.R.Tomchick, S.B.Lumpkins, M.V.Norgard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.03 / 1.63
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	34.251, 66.034, 151.019, 90.00, 90.00, 90.00
R / Rfree (%)	18.9 / 21.9

The binding sites of Chlorine atom in the Structure of Metal- Free RTP34 From Treponema Pallidum (pdb code 2o6f). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Structure of Metal- Free RTP34 From Treponema Pallidum, PDB code: 2o6f:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Structure of Metal- Free RTP34 From Treponema Pallidum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Metal- Free RTP34 From Treponema Pallidum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl302 b:77.0 occ:1.00 O A:HOH647 2.4 34.2 1.0 OE1 A:GLN102 3.5 23.0 1.0 CD A:LYS139 4.1 26.0 1.0 CB A:PHE100 4.2 18.4 1.0 CB A:GLN102 4.3 19.7 1.0 CD A:ARG141 4.4 24.4 1.0 CE A:LYS139 4.4 30.1 1.0 CG1 A:VAL109 4.6 22.9 1.0 CD A:GLN102 4.6 20.6 1.0 CB A:ARG141 4.6 20.6 1.0 CG A:LYS139 4.7 26.2 1.0 CG2 A:VAL109 4.7 24.6 1.0 O A:PHE100 4.8 19.8 1.0 C A:PHE100 5.0 19.0 1.0

Chlorine binding site 2 out of 3 in the Structure of Metal- Free RTP34 From Treponema Pallidum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Metal- Free RTP34 From Treponema Pallidum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl303 b:56.8 occ:1.00 OG A:SER148 3.3 28.4 0.5 N A:HIS149 3.4 25.9 1.0 CA A:SER148 3.8 25.0 0.5 CA A:SER148 3.8 24.5 0.5 NH1 A:ARG96 4.0 28.9 1.0 CB A:HIS149 4.0 28.4 1.0 CB A:SER148 4.0 25.4 0.5 NH2 A:ARG96 4.1 25.5 1.0 C A:SER148 4.1 25.3 0.5 C A:SER148 4.2 25.0 0.5 CB A:SER148 4.2 24.8 0.5 CA A:HIS149 4.4 27.8 1.0 CZ A:ARG96 4.4 28.2 1.0 OG A:SER148 4.6 25.3 0.5 O A:HOH635 4.9 47.2 1.0

Chlorine binding site 3 out of 3 in the Structure of Metal- Free RTP34 From Treponema Pallidum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Metal- Free RTP34 From Treponema Pallidum within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl301 b:63.1 occ:1.00 OE1 B:GLN102 3.8 29.4 1.0 CB B:GLN102 3.9 22.7 1.0 CB B:PHE100 4.0 22.4 1.0 O B:PHE100 4.3 21.7 1.0 CG1 B:VAL109 4.5 27.4 1.0 C B:PHE100 4.5 21.8 1.0 CG2 B:VAL109 4.5 29.3 1.0 N B:GLN102 4.6 21.0 1.0 CB B:ARG141 4.6 24.1 1.0 CB B:LYS139 4.7 21.3 1.0 O B:LYS139 4.7 21.8 1.0 CD B:GLN102 4.7 24.6 1.0 CD B:ARG141 4.8 27.2 1.0 OE2 B:GLU174 4.8 40.5 1.0 C B:LEU101 4.8 20.9 1.0 CA B:GLN102 4.9 21.4 1.0 CG B:GLN102 4.9 24.1 1.0 CA B:PHE100 4.9 21.6 1.0 N B:LEU101 4.9 19.5 1.0

R.K.Deka, C.A.Brautigam, F.L.Tomson, S.B.Lumpkins, D.R.Tomchick, M.Machius, M.V.Norgard. Crystal Structure of the TP34 (TP0971) Lipoprotein of Treponema Pallidum: Implications of Its Metal-Bound State and Affinity For Human Lactoferrin. J.Biol.Chem. V. 282 5944 2007.
ISSN: ISSN 0021-9258
PubMed: 17192261
DOI: 10.1074/JBC.M610215200