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Chlorine in PDB 2omd: Crystal Structure of Molybdopterin Converting Factor Subunit 2 (AQ_2181) From Aquifex Aeolicus VF5

Protein crystallography data

The structure of Crystal Structure of Molybdopterin Converting Factor Subunit 2 (AQ_2181) From Aquifex Aeolicus VF5, PDB code: 2omd was solved by J.Jeyakanthan, S.P.Kanaujia, C.Vasuki Ranjani, K.Sekar, Y.Agari, A.Ebihara, S.Kuramitsu, A.Shinkai, Y.Shiro, S.Yokoyama, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.89 / 2.00
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 119.995, 119.995, 125.804, 90.00, 90.00, 120.00
R / Rfree (%) 19 / 21.5

Other elements in 2omd:

The structure of Crystal Structure of Molybdopterin Converting Factor Subunit 2 (AQ_2181) From Aquifex Aeolicus VF5 also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Molybdopterin Converting Factor Subunit 2 (AQ_2181) From Aquifex Aeolicus VF5 (pdb code 2omd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Molybdopterin Converting Factor Subunit 2 (AQ_2181) From Aquifex Aeolicus VF5, PDB code: 2omd:

Chlorine binding site 1 out of 1 in 2omd

Go back to Chlorine Binding Sites List in 2omd
Chlorine binding site 1 out of 1 in the Crystal Structure of Molybdopterin Converting Factor Subunit 2 (AQ_2181) From Aquifex Aeolicus VF5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Molybdopterin Converting Factor Subunit 2 (AQ_2181) From Aquifex Aeolicus VF5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl800

b:26.2
occ:1.00
N A:GLU61 3.3 22.0 1.0
N A:MET62 3.4 25.6 1.0
C A:TYR59 3.5 21.9 1.0
O A:HOH862 3.6 57.7 1.0
CB A:TYR59 3.6 20.9 1.0
CB A:GLU61 3.6 31.4 1.0
CG A:MET62 3.7 26.5 1.0
O A:TYR59 3.7 20.8 1.0
CA A:TYR59 3.7 22.3 1.0
N A:PRO60 3.8 24.8 1.0
CA A:GLU61 3.9 27.5 1.0
CD A:PRO60 4.0 24.4 1.0
CB A:MET62 4.1 20.2 1.0
C A:GLU61 4.2 26.0 1.0
C A:PRO60 4.2 23.8 1.0
CA A:MET62 4.4 21.5 1.0
SD A:MET62 4.4 25.1 1.0
CA A:PRO60 4.4 23.0 1.0
CG A:GLU61 4.7 48.4 1.0
CG A:TYR59 4.7 18.9 1.0
CB A:PRO60 4.9 25.4 1.0

Reference:

J.Jeyakanthan, S.P.Kanaujia, C.Vasuki Ranjani, K.Sekar, Y.Agari, A.Ebihara, S.Kuramitsu, A.Shinkai, Y.Shiro, S.Yokoyama. Crystal Structure of Molybdopterin Converting Factor Subunit 2 (AQ_2181) From Aquifex Aeolicus VF5 To Be Published.
Page generated: Thu Jul 10 23:33:50 2025

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