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Chlorine in PDB 2pg4: Crystal Structure of A Putative Dna Binding Protein (APE_0880A) From Aeropyrum Pernix K1 at 2.21 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Dna Binding Protein (APE_0880A) From Aeropyrum Pernix K1 at 2.21 A Resolution, PDB code: 2pg4 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.43 / 2.21
Space group P 4 21 2
Cell size a, b, c (Å), α, β, γ (°) 109.840, 109.840, 36.760, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 25.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Putative Dna Binding Protein (APE_0880A) From Aeropyrum Pernix K1 at 2.21 A Resolution (pdb code 2pg4). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of A Putative Dna Binding Protein (APE_0880A) From Aeropyrum Pernix K1 at 2.21 A Resolution, PDB code: 2pg4:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 2pg4

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Chlorine binding site 1 out of 3 in the Crystal Structure of A Putative Dna Binding Protein (APE_0880A) From Aeropyrum Pernix K1 at 2.21 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Putative Dna Binding Protein (APE_0880A) From Aeropyrum Pernix K1 at 2.21 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl95

b:45.4
occ:1.00
ND1 A:HIS12 3.2 41.8 1.0
N A:GLN9 3.3 40.9 1.0
NH2 A:ARG53 3.4 48.2 1.0
NE A:ARG53 3.6 47.9 1.0
CD1 A:LEU50 3.8 39.5 1.0
CD2 A:LEU8 3.8 43.9 1.0
CA A:LEU8 3.8 43.7 1.0
CB A:GLN9 3.9 41.9 1.0
CZ A:ARG53 4.0 47.5 1.0
CE1 A:HIS12 4.0 41.7 1.0
C A:LEU8 4.1 42.9 1.0
CB A:LEU8 4.2 41.9 1.0
CG A:HIS12 4.2 38.5 1.0
CA A:GLN9 4.2 43.2 1.0
CB A:HIS12 4.4 49.4 1.0
CG A:LEU8 4.7 43.0 1.0
CD A:ARG53 4.7 42.3 1.0
O A:ARG7 4.8 46.4 1.0
O A:GLN9 5.0 39.2 1.0

Chlorine binding site 2 out of 3 in 2pg4

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Chlorine binding site 2 out of 3 in the Crystal Structure of A Putative Dna Binding Protein (APE_0880A) From Aeropyrum Pernix K1 at 2.21 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Putative Dna Binding Protein (APE_0880A) From Aeropyrum Pernix K1 at 2.21 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl95

b:38.8
occ:1.00
NH2 B:ARG53 3.1 46.5 1.0
ND1 B:HIS12 3.1 46.6 1.0
NE B:ARG53 3.1 51.6 1.0
N B:GLN9 3.4 42.6 1.0
CZ B:ARG53 3.5 55.6 1.0
CD1 B:LEU50 3.7 41.8 1.0
CB B:GLN9 3.9 44.9 1.0
CA B:LEU8 3.9 43.6 1.0
CE1 B:HIS12 4.0 40.3 1.0
CD2 B:LEU8 4.0 48.0 1.0
CG B:HIS12 4.1 46.3 1.0
C B:LEU8 4.2 45.2 1.0
CB B:HIS12 4.2 48.5 1.0
CB B:LEU8 4.3 45.0 1.0
CA B:GLN9 4.3 44.3 1.0
CD B:ARG53 4.3 51.4 1.0
O B:GLN9 4.8 46.2 1.0
CG B:LEU8 4.8 53.6 1.0
NH1 B:ARG53 4.8 50.0 1.0

Chlorine binding site 3 out of 3 in 2pg4

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Chlorine binding site 3 out of 3 in the Crystal Structure of A Putative Dna Binding Protein (APE_0880A) From Aeropyrum Pernix K1 at 2.21 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Putative Dna Binding Protein (APE_0880A) From Aeropyrum Pernix K1 at 2.21 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl96

b:77.1
occ:1.00
O B:HOH118 2.8 60.3 1.0
O B:LEU72 3.0 46.5 1.0
O B:HOH119 3.1 62.9 1.0
O B:LEU20 3.8 47.9 1.0
CD2 B:LEU20 3.9 39.6 1.0
O B:HOH102 4.0 47.7 1.0
CD B:PRO30 4.1 42.2 1.0
CB B:LEU20 4.2 43.8 1.0
C B:LEU72 4.2 48.7 1.0
CA B:LEU20 4.4 45.7 1.0
C B:LEU20 4.4 47.0 1.0
CA B:LYS73 4.4 50.3 1.0
CG B:PRO30 4.5 49.4 1.0
CG B:LEU20 4.5 48.1 1.0
CD B:LYS73 4.6 64.5 1.0
CB B:PHE23 4.7 40.6 1.0
OG1 B:THR71 4.8 45.7 1.0
N B:LYS73 4.8 48.0 1.0
O B:TYR28 4.8 48.3 1.0
CB B:GLU24 4.8 49.8 1.0
N B:LEU74 4.9 48.6 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Thu Jul 10 23:51:23 2025

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