Chlorine in PDB 2qmo: Crystal Structure of Dethiobiotin Synthetase (Biod) From Helicobacter Pylori

All present enzymatic activity of Crystal Structure of Dethiobiotin Synthetase (Biod) From Helicobacter Pylori:
6.3.3.3;

The structure of Crystal Structure of Dethiobiotin Synthetase (Biod) From Helicobacter Pylori, PDB code: 2qmo was solved by M.Chruszcz, X.Xu, M.Cuff, M.Cymborowski, H.Zheng, A.Savchenko, A.Edwards, A.Joachimiak, W.Minor, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.47
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	82.095, 37.454, 69.636, 90.00, 101.48, 90.00
R / Rfree (%)	14.8 / 17.9

The binding sites of Chlorine atom in the Crystal Structure of Dethiobiotin Synthetase (Biod) From Helicobacter Pylori (pdb code 2qmo). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Dethiobiotin Synthetase (Biod) From Helicobacter Pylori, PDB code: 2qmo:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Dethiobiotin Synthetase (Biod) From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Dethiobiotin Synthetase (Biod) From Helicobacter Pylori within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl301 b:18.3 occ:1.00 OG A:SER187 3.0 19.9 1.0 N A:GLY151 3.2 16.1 1.0 O A:HOH404 3.2 19.9 1.0 O A:HOH422 3.3 24.1 1.0 N A:ILE153 3.5 12.7 1.0 N A:LEU152 3.6 14.5 1.0 CG1 A:ILE153 3.6 14.7 1.0 CD1 A:ILE153 3.6 17.9 1.0 CB A:SER187 3.8 16.4 1.0 O A:HOH305 3.9 16.5 1.0 CB A:ILE153 3.9 13.1 1.0 CD1 A:LEU150 3.9 22.1 1.0 CA A:GLY151 4.0 15.6 1.0 C A:GLY151 4.0 15.1 1.0 CG A:LEU152 4.0 13.8 1.0 CA A:LEU150 4.1 15.4 1.0 C A:LEU150 4.1 15.2 1.0 CA A:ILE153 4.3 13.1 1.0 O A:ASN149 4.4 15.3 1.0 CA A:LEU152 4.4 14.1 1.0 CA A:SER187 4.5 15.8 1.0 C A:LEU152 4.5 13.1 1.0 CD1 A:LEU152 4.7 15.9 1.0 CD2 A:LEU152 4.8 14.9 1.0 CB A:LEU152 4.8 13.8 1.0 CG A:LEU150 4.8 18.8 1.0 O A:GLY151 4.9 15.5 1.0 CB A:LEU150 5.0 16.4 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Dethiobiotin Synthetase (Biod) From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Dethiobiotin Synthetase (Biod) From Helicobacter Pylori within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl302 b:38.3 occ:1.00 O A:HOH517 2.9 35.1 1.0 N A:THR14 3.1 16.7 1.0 O A:HOH364 3.1 23.1 1.0 O A:HOH572 3.2 46.8 1.0 OG1 A:THR14 3.2 18.0 1.0 O A:HOH608 3.4 43.5 1.0 N A:LYS13 3.4 16.0 1.0 O A:HOH322 3.4 17.4 1.0 CB A:THR14 3.6 17.4 1.0 C A:GLY12 3.7 16.8 1.0 CG A:LYS13 3.8 18.6 1.0 CA A:GLY12 3.9 15.9 1.0 CA A:THR14 3.9 17.1 1.0 C A:LYS13 4.0 16.2 1.0 CA A:LYS13 4.1 16.9 1.0 N A:GLY12 4.3 17.0 1.0 CB A:LYS13 4.5 19.2 1.0 O A:GLY12 4.5 18.8 1.0 NZ A:LYS13 4.7 25.1 1.0 OD1 A:ASP50 4.8 26.0 1.0 O A:HOH495 4.9 34.3 1.0 N A:THR15 4.9 18.2 0.7 N A:THR15 4.9 17.3 0.3 OE2 A:GLU116 5.0 20.2 1.0 CG2 A:THR14 5.0 17.8 1.0 OD2 A:ASP50 5.0 22.1 1.0

P.J.Porebski, M.Klimecka, M.Chruszcz, R.A.Nicholls, K.Murzyn, M.E.Cuff, X.Xu, M.Cymborowski, G.N.Murshudov, A.Savchenko, A.Edwards, W.Minor. Structural Characterization of Helicobacter Pylori Dethiobiotin Synthetase Reveals Differences Between Family Members. Febs J. V. 279 1093 2012.
ISSN: ISSN 1742-464X
PubMed: 22284390
DOI: 10.1111/J.1742-4658.2012.08506.X