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Chlorine in PDB 2r3b: Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution, PDB code: 2r3b was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.59 / 1.80
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 97.817, 159.564, 102.497, 90.00, 90.00, 90.00
R / Rfree (%) 15 / 18.3

Other elements in 2r3b:

The structure of Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution (pdb code 2r3b). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution, PDB code: 2r3b:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 2r3b

Go back to Chlorine Binding Sites List in 2r3b
Chlorine binding site 1 out of 3 in the Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl293

b:27.3
occ:1.00
O A:HOH340 2.9 24.3 1.0
O A:HOH303 3.1 16.8 1.0
N A:ARG35 3.3 12.2 1.0
O A:HOH447 3.3 40.0 1.0
CB A:ASN34 3.6 12.0 1.0
CZ A:ARG35 3.6 26.7 1.0
CB A:ARG35 3.7 12.2 1.0
NE A:ARG35 3.8 17.3 1.0
NH2 A:ARG35 3.8 25.5 1.0
CG A:ARG35 3.8 14.5 1.0
CG A:ASN34 4.0 11.6 1.0
NH1 A:ARG35 4.0 21.1 1.0
ND2 A:ASN34 4.0 15.8 1.0
CA A:ARG35 4.1 12.0 1.0
C A:ASN34 4.3 12.3 1.0
CA A:ASN34 4.3 10.9 1.0
OD2 A:ASP105 4.4 50.8 1.0
CD A:ARG35 4.4 17.4 1.0
O A:HOH466 4.4 41.9 1.0
O A:HOH574 4.5 54.6 1.0
O A:HOH309 4.7 19.1 1.0
OD1 A:ASN34 4.7 16.9 1.0
O A:HOH507 4.9 46.4 1.0
N A:GLN36 4.9 11.4 1.0
OD2 A:ASP61 5.0 14.1 1.0

Chlorine binding site 2 out of 3 in 2r3b

Go back to Chlorine Binding Sites List in 2r3b
Chlorine binding site 2 out of 3 in the Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl293

b:41.1
occ:1.00
O B:HOH522 3.1 47.4 1.0
N B:GLY213 3.1 15.1 1.0
N B:GLY215 3.2 13.7 1.0
N B:ASP216 3.5 16.1 1.0
CA B:GLY213 3.6 14.4 1.0
OD2 B:ASP216 3.6 21.3 1.0
CA B:GLY215 3.6 16.2 1.0
C B:GLY213 3.6 13.8 1.0
N B:THR214 3.7 14.7 1.0
CG B:ASP216 3.8 22.9 1.0
OD1 B:ASP216 3.9 19.5 1.0
C B:GLY215 4.1 15.4 1.0
O2 B:EDO296 4.1 39.5 1.0
C B:THR214 4.2 14.5 1.0
C B:GLY212 4.3 16.4 1.0
O B:GLY213 4.3 15.5 1.0
O B:HOH541 4.3 51.3 1.0
O B:HOH361 4.4 25.4 1.0
CE A:LYS22 4.4 45.3 1.0
CA B:THR214 4.5 14.4 1.0
CA B:GLY212 4.6 17.5 1.0
CB B:ASP216 4.6 15.1 1.0
CA B:ASP216 4.6 15.0 1.0
O B:THR211 4.8 17.9 1.0
O B:HOH331 4.8 20.0 1.0

Chlorine binding site 3 out of 3 in 2r3b

Go back to Chlorine Binding Sites List in 2r3b
Chlorine binding site 3 out of 3 in the Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl294

b:51.8
occ:1.00
O1 B:EDO296 2.8 31.1 1.0
O A:ALA75 2.9 19.3 1.0
N B:GLY39 2.9 13.7 1.0
C B:TYR37 3.2 18.0 1.0
CA B:GLY39 3.3 14.5 1.0
C1 B:EDO296 3.4 40.8 1.0
CA B:TYR37 3.4 17.2 1.0
O B:TYR37 3.5 16.7 1.0
NE2 A:HIS69 3.5 18.1 1.0
N B:GLY38 3.6 15.5 1.0
N B:ALA40 3.6 13.9 1.0
C A:ALA75 3.7 16.4 1.0
O A:PRO73 3.8 14.6 1.0
O B:GLN36 3.8 12.7 1.0
CA A:MSE76 3.9 11.9 1.0
C B:GLY39 3.9 12.9 1.0
CG A:MSE76 3.9 18.6 1.0
CE1 A:HIS69 4.0 16.8 1.0
C B:GLY38 4.0 14.4 1.0
N A:MSE76 4.1 12.8 1.0
C2 B:EDO296 4.3 38.8 1.0
CA B:GLY38 4.4 15.3 1.0
N B:TYR37 4.4 14.8 1.0
CB B:TYR37 4.4 14.9 1.0
CB A:MSE76 4.5 15.4 1.0
CD2 A:HIS69 4.5 16.4 1.0
C B:GLN36 4.5 15.4 1.0
O A:GLU74 4.8 17.5 1.0
CA B:ALA40 4.8 14.2 1.0
C A:GLU74 4.9 15.6 1.0
N A:ALA75 4.9 12.4 1.0
C A:PRO73 4.9 14.1 1.0
CA A:ALA75 4.9 13.5 1.0
C A:MSE76 5.0 11.4 1.0
O B:GLY38 5.0 15.5 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Fri Jul 11 00:21:04 2025

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