Chlorine in PDB 2r3b: Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution
Protein crystallography data
The structure of Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution, PDB code: 2r3b
was solved by
Joint Center For Structural Genomics (Jcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.59 /
1.80
|
Space group
|
C 2 2 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
97.817,
159.564,
102.497,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
15 /
18.3
|
Other elements in 2r3b:
The structure of Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution
(pdb code 2r3b). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the
Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution, PDB code: 2r3b:
Jump to Chlorine binding site number:
1;
2;
3;
Chlorine binding site 1 out
of 3 in 2r3b
Go back to
Chlorine Binding Sites List in 2r3b
Chlorine binding site 1 out
of 3 in the Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl293
b:27.3
occ:1.00
|
O
|
A:HOH340
|
2.9
|
24.3
|
1.0
|
O
|
A:HOH303
|
3.1
|
16.8
|
1.0
|
N
|
A:ARG35
|
3.3
|
12.2
|
1.0
|
O
|
A:HOH447
|
3.3
|
40.0
|
1.0
|
CB
|
A:ASN34
|
3.6
|
12.0
|
1.0
|
CZ
|
A:ARG35
|
3.6
|
26.7
|
1.0
|
CB
|
A:ARG35
|
3.7
|
12.2
|
1.0
|
NE
|
A:ARG35
|
3.8
|
17.3
|
1.0
|
NH2
|
A:ARG35
|
3.8
|
25.5
|
1.0
|
CG
|
A:ARG35
|
3.8
|
14.5
|
1.0
|
CG
|
A:ASN34
|
4.0
|
11.6
|
1.0
|
NH1
|
A:ARG35
|
4.0
|
21.1
|
1.0
|
ND2
|
A:ASN34
|
4.0
|
15.8
|
1.0
|
CA
|
A:ARG35
|
4.1
|
12.0
|
1.0
|
C
|
A:ASN34
|
4.3
|
12.3
|
1.0
|
CA
|
A:ASN34
|
4.3
|
10.9
|
1.0
|
OD2
|
A:ASP105
|
4.4
|
50.8
|
1.0
|
CD
|
A:ARG35
|
4.4
|
17.4
|
1.0
|
O
|
A:HOH466
|
4.4
|
41.9
|
1.0
|
O
|
A:HOH574
|
4.5
|
54.6
|
1.0
|
O
|
A:HOH309
|
4.7
|
19.1
|
1.0
|
OD1
|
A:ASN34
|
4.7
|
16.9
|
1.0
|
O
|
A:HOH507
|
4.9
|
46.4
|
1.0
|
N
|
A:GLN36
|
4.9
|
11.4
|
1.0
|
OD2
|
A:ASP61
|
5.0
|
14.1
|
1.0
|
|
Chlorine binding site 2 out
of 3 in 2r3b
Go back to
Chlorine Binding Sites List in 2r3b
Chlorine binding site 2 out
of 3 in the Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl293
b:41.1
occ:1.00
|
O
|
B:HOH522
|
3.1
|
47.4
|
1.0
|
N
|
B:GLY213
|
3.1
|
15.1
|
1.0
|
N
|
B:GLY215
|
3.2
|
13.7
|
1.0
|
N
|
B:ASP216
|
3.5
|
16.1
|
1.0
|
CA
|
B:GLY213
|
3.6
|
14.4
|
1.0
|
OD2
|
B:ASP216
|
3.6
|
21.3
|
1.0
|
CA
|
B:GLY215
|
3.6
|
16.2
|
1.0
|
C
|
B:GLY213
|
3.6
|
13.8
|
1.0
|
N
|
B:THR214
|
3.7
|
14.7
|
1.0
|
CG
|
B:ASP216
|
3.8
|
22.9
|
1.0
|
OD1
|
B:ASP216
|
3.9
|
19.5
|
1.0
|
C
|
B:GLY215
|
4.1
|
15.4
|
1.0
|
O2
|
B:EDO296
|
4.1
|
39.5
|
1.0
|
C
|
B:THR214
|
4.2
|
14.5
|
1.0
|
C
|
B:GLY212
|
4.3
|
16.4
|
1.0
|
O
|
B:GLY213
|
4.3
|
15.5
|
1.0
|
O
|
B:HOH541
|
4.3
|
51.3
|
1.0
|
O
|
B:HOH361
|
4.4
|
25.4
|
1.0
|
CE
|
A:LYS22
|
4.4
|
45.3
|
1.0
|
CA
|
B:THR214
|
4.5
|
14.4
|
1.0
|
CA
|
B:GLY212
|
4.6
|
17.5
|
1.0
|
CB
|
B:ASP216
|
4.6
|
15.1
|
1.0
|
CA
|
B:ASP216
|
4.6
|
15.0
|
1.0
|
O
|
B:THR211
|
4.8
|
17.9
|
1.0
|
O
|
B:HOH331
|
4.8
|
20.0
|
1.0
|
|
Chlorine binding site 3 out
of 3 in 2r3b
Go back to
Chlorine Binding Sites List in 2r3b
Chlorine binding site 3 out
of 3 in the Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl294
b:51.8
occ:1.00
|
O1
|
B:EDO296
|
2.8
|
31.1
|
1.0
|
O
|
A:ALA75
|
2.9
|
19.3
|
1.0
|
N
|
B:GLY39
|
2.9
|
13.7
|
1.0
|
C
|
B:TYR37
|
3.2
|
18.0
|
1.0
|
CA
|
B:GLY39
|
3.3
|
14.5
|
1.0
|
C1
|
B:EDO296
|
3.4
|
40.8
|
1.0
|
CA
|
B:TYR37
|
3.4
|
17.2
|
1.0
|
O
|
B:TYR37
|
3.5
|
16.7
|
1.0
|
NE2
|
A:HIS69
|
3.5
|
18.1
|
1.0
|
N
|
B:GLY38
|
3.6
|
15.5
|
1.0
|
N
|
B:ALA40
|
3.6
|
13.9
|
1.0
|
C
|
A:ALA75
|
3.7
|
16.4
|
1.0
|
O
|
A:PRO73
|
3.8
|
14.6
|
1.0
|
O
|
B:GLN36
|
3.8
|
12.7
|
1.0
|
CA
|
A:MSE76
|
3.9
|
11.9
|
1.0
|
C
|
B:GLY39
|
3.9
|
12.9
|
1.0
|
CG
|
A:MSE76
|
3.9
|
18.6
|
1.0
|
CE1
|
A:HIS69
|
4.0
|
16.8
|
1.0
|
C
|
B:GLY38
|
4.0
|
14.4
|
1.0
|
N
|
A:MSE76
|
4.1
|
12.8
|
1.0
|
C2
|
B:EDO296
|
4.3
|
38.8
|
1.0
|
CA
|
B:GLY38
|
4.4
|
15.3
|
1.0
|
N
|
B:TYR37
|
4.4
|
14.8
|
1.0
|
CB
|
B:TYR37
|
4.4
|
14.9
|
1.0
|
CB
|
A:MSE76
|
4.5
|
15.4
|
1.0
|
CD2
|
A:HIS69
|
4.5
|
16.4
|
1.0
|
C
|
B:GLN36
|
4.5
|
15.4
|
1.0
|
O
|
A:GLU74
|
4.8
|
17.5
|
1.0
|
CA
|
B:ALA40
|
4.8
|
14.2
|
1.0
|
C
|
A:GLU74
|
4.9
|
15.6
|
1.0
|
N
|
A:ALA75
|
4.9
|
12.4
|
1.0
|
C
|
A:PRO73
|
4.9
|
14.1
|
1.0
|
CA
|
A:ALA75
|
4.9
|
13.5
|
1.0
|
C
|
A:MSE76
|
5.0
|
11.4
|
1.0
|
O
|
B:GLY38
|
5.0
|
15.5
|
1.0
|
|
Reference:
Joint Center For Structural Genomics (Jcsg),
Joint Center For Structural Genomics (Jcsg).
N/A N/A.
Page generated: Fri Jul 11 00:21:04 2025
|