Chlorine in PDB 2v84: Crystal Structure of the TP0655 (Tppotd) Lipoprotein of Treponema Pallidum

The structure of Crystal Structure of the TP0655 (Tppotd) Lipoprotein of Treponema Pallidum, PDB code: 2v84 was solved by M.Machius, C.A.Brautigam, D.R.Tomchick, P.Ward, Z.Otwinowski, J.S.Blevine, R.K.Deka, M.V.Norgard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.78
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	51.610, 86.270, 89.500, 90.00, 90.00, 90.00
R / Rfree (%)	23.4 / 26

The binding sites of Chlorine atom in the Crystal Structure of the TP0655 (Tppotd) Lipoprotein of Treponema Pallidum (pdb code 2v84). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of the TP0655 (Tppotd) Lipoprotein of Treponema Pallidum, PDB code: 2v84:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in the Crystal Structure of the TP0655 (Tppotd) Lipoprotein of Treponema Pallidum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the TP0655 (Tppotd) Lipoprotein of Treponema Pallidum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1328 b:62.6 occ:1.00 ND1 A:HIS314 3.7 37.2 1.0 CB A:ALA317 3.8 35.0 1.0 CA A:HIS314 3.9 36.4 1.0 NE2 A:HIS318 3.9 37.5 1.0 CB A:HIS314 4.1 36.3 1.0 CD2 A:HIS318 4.2 36.8 1.0 O A:HIS314 4.2 36.5 1.0 CG A:HIS314 4.3 37.0 1.0 O A:HOH2061 4.4 36.6 1.0 C A:HIS314 4.6 35.9 1.0 CE1 A:HIS318 4.6 37.1 1.0 CE1 A:HIS314 4.8 36.4 1.0 O A:GLU313 4.9 38.1 1.0 N A:HIS314 5.0 36.6 1.0 CG A:HIS318 5.0 35.3 1.0

Chlorine binding site 2 out of 5 in the Crystal Structure of the TP0655 (Tppotd) Lipoprotein of Treponema Pallidum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the TP0655 (Tppotd) Lipoprotein of Treponema Pallidum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1329 b:85.2 occ:1.00 CB A:TYR140 3.8 36.9 1.0 CG2 A:VAL187 3.8 31.4 1.0 CG1 A:VAL187 4.0 31.8 1.0 CB A:VAL187 4.2 31.5 1.0 CA A:VAL187 4.2 31.4 1.0 CD1 A:TYR140 4.3 42.1 1.0 CG A:TYR140 4.3 40.3 1.0 CA A:TYR140 4.6 34.7 1.0 O A:TYR140 4.6 32.9 1.0 O A:VAL187 4.9 31.0 1.0

Chlorine binding site 3 out of 5 in the Crystal Structure of the TP0655 (Tppotd) Lipoprotein of Treponema Pallidum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the TP0655 (Tppotd) Lipoprotein of Treponema Pallidum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1330 b:90.7 occ:1.00 CG2 A:THR217 3.7 36.6 1.0 CB A:MET221 3.7 39.5 1.0 O A:MET221 3.9 38.0 1.0 CG1 A:ILE225 4.4 28.4 1.0 CG A:MET221 4.4 40.7 1.0 C A:MET221 4.6 37.8 1.0 CE A:LYS121 4.6 35.3 1.0 OG1 A:THR217 4.6 36.9 1.0 NZ A:LYS121 4.6 38.9 1.0 ND2 A:ASN119 4.7 26.2 1.0 CA A:MET221 4.7 38.8 1.0 CD1 A:ILE225 4.7 28.8 1.0 CE2 A:PHE198 4.8 27.7 1.0 CB A:HIS224 4.8 32.1 1.0 CB A:THR217 4.8 36.0 1.0 O A:ALA199 4.9 28.9 1.0

Chlorine binding site 4 out of 5 in the Crystal Structure of the TP0655 (Tppotd) Lipoprotein of Treponema Pallidum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the TP0655 (Tppotd) Lipoprotein of Treponema Pallidum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1331 b:77.2 occ:1.00 CG A:GLU211 3.9 32.3 1.0 O A:GLU211 4.0 29.8 1.0 CA A:ALA212 4.0 29.5 1.0 N A:ALA212 4.1 29.8 1.0 C A:GLU211 4.1 29.7 1.0 CB A:ALA212 4.3 29.7 1.0 CB A:GLU211 4.6 30.1 1.0 CB A:ALA215 4.7 32.8 1.0 CD1 A:PHE274 4.7 38.2 1.0 CE1 A:PHE274 4.8 39.4 1.0

Chlorine binding site 5 out of 5 in the Crystal Structure of the TP0655 (Tppotd) Lipoprotein of Treponema Pallidum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of the TP0655 (Tppotd) Lipoprotein of Treponema Pallidum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1332 b:71.4 occ:1.00 CE A:LYS48 3.9 41.5 1.0 CD A:LYS48 4.3 41.3 1.0 CG A:LYS48 4.4 41.6 1.0 NZ A:LYS48 4.9 43.3 1.0

M.Machius, C.A.Brautigam, D.R.Tomchick, P.Ward, Z.Otwinowski, J.S.Blevins, R.K.Deka, M.V.Norgard. Structural and Biochemical Basis For Polyamine Binding to the TP0655 Lipoprotein of Treponema Pallidum: Putative Role For TP0655 (Tppotd) As A Polyamine Receptor. J.Mol.Biol. V. 373 681 2007.
ISSN: ISSN 0022-2836
PubMed: 17868688
DOI: 10.1016/J.JMB.2007.08.018