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Chlorine in PDB 2vbv: Riboflavin Kinase MJ0056 From Methanocaldococcus Jannaschii in Complex with Cdp and Fmn

Enzymatic activity of Riboflavin Kinase MJ0056 From Methanocaldococcus Jannaschii in Complex with Cdp and Fmn

All present enzymatic activity of Riboflavin Kinase MJ0056 From Methanocaldococcus Jannaschii in Complex with Cdp and Fmn:
2.7.1.161;

Protein crystallography data

The structure of Riboflavin Kinase MJ0056 From Methanocaldococcus Jannaschii in Complex with Cdp and Fmn, PDB code: 2vbv was solved by M.D.Hartmann, M.Ammelburg, S.Djuranovic, J.Martin, A.N.Lupas, K.Zeth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.4
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.482, 73.299, 104.907, 90.00, 90.00, 90.00
R / Rfree (%) 22.7 / 32.3

Other elements in 2vbv:

The structure of Riboflavin Kinase MJ0056 From Methanocaldococcus Jannaschii in Complex with Cdp and Fmn also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Iodine (I) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Riboflavin Kinase MJ0056 From Methanocaldococcus Jannaschii in Complex with Cdp and Fmn (pdb code 2vbv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Riboflavin Kinase MJ0056 From Methanocaldococcus Jannaschii in Complex with Cdp and Fmn, PDB code: 2vbv:

Chlorine binding site 1 out of 1 in 2vbv

Go back to Chlorine Binding Sites List in 2vbv
Chlorine binding site 1 out of 1 in the Riboflavin Kinase MJ0056 From Methanocaldococcus Jannaschii in Complex with Cdp and Fmn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Riboflavin Kinase MJ0056 From Methanocaldococcus Jannaschii in Complex with Cdp and Fmn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1139

b:46.2
occ:1.00
O A:SER13 3.4 34.0 1.0
N A:SER13 3.8 34.0 1.0
OD2 A:ASP122 3.9 42.6 1.0
C A:SER13 4.3 33.6 1.0
CB A:SER13 4.3 33.5 1.0
CA A:SER13 4.4 33.6 1.0
CB A:VAL12 4.5 35.4 1.0
CA A:VAL12 4.7 34.6 1.0
CG A:ASP122 4.7 44.2 1.0
C A:VAL12 4.8 34.3 1.0
CG1 A:VAL12 4.8 33.4 1.0

Reference:

M.Ammelburg, M.D.Hartmann, S.Djuranovic, V.Alva, K.K.Koretke, J.Martin, G.Sauer, V.Truffault, K.Zeth, A.N.Lupas, M.Coles. A Ctp-Dependent Archaeal Riboflavin Kinase Forms A Bridge in the Evolution of Cradle-Loop Barrels. Structure V. 15 1577 2007.
ISSN: ISSN 0969-2126
PubMed: 18073108
DOI: 10.1016/J.STR.2007.09.027
Page generated: Fri Jul 11 00:44:54 2025

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