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Chlorine in PDB 2wp8: Yeast RRP44 Nuclease

Protein crystallography data

The structure of Yeast RRP44 Nuclease, PDB code: 2wp8 was solved by J.Basquin, F.Bonneau, J.Ebert, E.Lorentzen, E.Conti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.99 / 3.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 110.900, 125.680, 139.400, 90.00, 90.00, 90.00
R / Rfree (%) 20.698 / 27.291

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Yeast RRP44 Nuclease (pdb code 2wp8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Yeast RRP44 Nuclease, PDB code: 2wp8:

Chlorine binding site 1 out of 1 in 2wp8

Go back to Chlorine Binding Sites List in 2wp8
Chlorine binding site 1 out of 1 in the Yeast RRP44 Nuclease


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Yeast RRP44 Nuclease within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1240

b:44.2
occ:1.00
N B:ALA35 3.2 24.9 1.0
N B:HIS34 3.2 25.8 1.0
C B:HIS32 3.3 25.6 1.0
CA B:HIS32 3.4 25.4 1.0
N B:PRO33 3.6 25.5 1.0
CB B:HIS34 3.7 26.1 1.0
O B:HIS32 3.7 25.7 1.0
CB B:HIS32 3.8 25.2 1.0
CA B:HIS34 3.8 25.8 1.0
CB B:ALA35 3.8 24.3 1.0
CD B:PRO33 3.9 25.6 1.0
C B:HIS34 3.9 25.5 1.0
CA B:ALA35 4.1 24.5 1.0
C B:PRO33 4.3 25.5 1.0
CG B:HIS34 4.3 27.8 1.0
CG B:PRO33 4.4 25.4 1.0
CA B:PRO33 4.5 25.4 1.0
CD2 B:HIS34 4.6 29.8 1.0
ND1 B:HIS32 4.6 23.4 1.0
CG B:HIS32 4.6 23.7 1.0
N B:HIS32 4.7 25.8 1.0
O B:THR31 4.9 26.1 1.0

Reference:

F.Bonneau, J.Basquin, J.Ebert, E.Lorentzen, E.Conti. The Yeast Exosome Functions As A Macromolecular Cage to Channel Rna Substrates For Degradation. Cell(Cambridge,Mass.) V. 139 547 2009.
ISSN: ISSN 0092-8674
PubMed: 19879841
DOI: 10.1016/J.CELL.2009.08.042
Page generated: Fri Jul 11 01:32:49 2025

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