Chlorine in PDB 2y3d: Zn-Bound Form of Cupriavidus Metallidurans CH34 Cnrxs

The structure of Zn-Bound Form of Cupriavidus Metallidurans CH34 Cnrxs, PDB code: 2y3d was solved by J.Trepreau, E.Girard, A.P.Maillard, E.De Rosny, I.Petit-Haertlein, R.Kahn, J.Coves, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.953 / 2.30
Space group	I 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	155.721, 155.721, 155.721, 90.00, 90.00, 90.00
R / Rfree (%)	20.7 / 25.93

The structure of Zn-Bound Form of Cupriavidus Metallidurans CH34 Cnrxs also contains other interesting chemical elements:

Zinc

(Zn)

3 atoms

The binding sites of Chlorine atom in the Zn-Bound Form of Cupriavidus Metallidurans CH34 Cnrxs (pdb code 2y3d). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Zn-Bound Form of Cupriavidus Metallidurans CH34 Cnrxs, PDB code: 2y3d:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in the Zn-Bound Form of Cupriavidus Metallidurans CH34 Cnrxs


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Zn-Bound Form of Cupriavidus Metallidurans CH34 Cnrxs within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1146 b:29.9 occ:1.00 ZN A:ZN149 2.3 28.2 1.0 ND1 A:HIS42 3.1 46.5 1.0 OE1 A:GLU63 3.4 33.4 1.0 CD2 A:LEU45 3.5 40.8 1.0 NE2 A:HIS119 3.6 19.9 1.0 NE2 A:HIS38 3.6 25.4 1.0 CG A:MET123 3.7 29.2 1.0 CB A:HIS42 3.8 47.2 1.0 CD2 A:HIS38 3.9 23.1 1.0 CG A:HIS42 3.9 54.3 1.0 CA A:HIS42 3.9 52.3 1.0 CE1 A:HIS42 4.2 42.8 1.0 CE1 A:HIS119 4.3 18.4 1.0 CE A:MET123 4.3 22.3 1.0 N A:HIS42 4.3 49.6 1.0 CB A:MET123 4.3 31.1 1.0 CD2 A:HIS119 4.4 22.1 1.0 CD A:GLU63 4.5 31.2 1.0 CE1 A:HIS38 4.6 33.8 1.0 SD A:MET123 4.7 29.1 1.0 C A:LEU41 4.8 52.9 1.0 OE2 A:GLU63 4.9 36.9 1.0 OH A:TYR135 4.9 30.9 1.0 O A:HIS38 4.9 45.6 1.0 CG A:LEU45 4.9 49.2 1.0 CG A:HIS38 5.0 37.6 1.0

Chlorine binding site 2 out of 5 in the Zn-Bound Form of Cupriavidus Metallidurans CH34 Cnrxs


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Zn-Bound Form of Cupriavidus Metallidurans CH34 Cnrxs within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1147 b:63.1 occ:1.00 ZN A:ZN150 2.3 44.2 1.0 OE1 A:GLU60 3.2 31.1 1.0 OE2 A:GLU60 3.6 42.9 1.0 NE2 A:HIS42 3.6 47.1 1.0 CD A:GLU60 3.7 36.6 1.0 NE2 A:HIS46 3.7 63.0 1.0 O A:HOH2008 3.9 27.3 1.0 CE1 A:HIS46 4.1 63.3 1.0 CD2 A:HIS42 4.2 52.3 1.0 CE1 A:HIS42 4.7 42.8 1.0 O A:HOH2003 4.9 39.4 1.0 CD2 A:HIS46 4.9 67.5 1.0

Chlorine binding site 3 out of 5 in the Zn-Bound Form of Cupriavidus Metallidurans CH34 Cnrxs


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Zn-Bound Form of Cupriavidus Metallidurans CH34 Cnrxs within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1148 b:37.8 occ:0.50 NE A:ARG70 2.7 45.0 1.0 O A:HOH2019 2.8 51.3 1.0 O A:ALA67 2.9 31.0 1.0 NH2 A:ARG70 2.9 41.9 1.0 CZ A:ARG70 3.2 44.6 1.0 CG A:ARG71 3.6 45.7 1.0 C A:ALA67 3.6 29.3 1.0 CA A:ALA67 3.7 26.1 1.0 CB A:ARG70 3.7 29.9 1.0 CD A:ARG70 3.8 37.0 1.0 N A:ARG71 3.9 34.1 1.0 CG A:ARG70 3.9 36.4 1.0 NH1 A:ARG71 4.0 46.8 1.0 CB A:ALA67 4.0 25.6 1.0 CB A:ARG71 4.3 40.3 1.0 CA A:ARG71 4.3 37.0 1.0 C A:ARG70 4.4 36.8 1.0 NH1 A:ARG70 4.5 44.3 1.0 OE1 A:GLU74 4.6 44.6 1.0 CA A:ARG70 4.6 35.0 1.0 CD A:ARG71 4.6 48.8 1.0 CZ A:ARG71 4.6 47.6 1.0 O A:HOH2021 4.7 55.5 1.0 NE A:ARG71 4.9 53.4 1.0 N A:GLN68 4.9 28.7 1.0

Chlorine binding site 4 out of 5 in the Zn-Bound Form of Cupriavidus Metallidurans CH34 Cnrxs


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Zn-Bound Form of Cupriavidus Metallidurans CH34 Cnrxs within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1149 b:40.7 occ:0.30 O B:HOH2050 3.2 52.8 1.0 CB B:PHE121 3.4 32.8 1.0 O A:HOH2035 3.4 57.9 1.0 N A:TRP94 3.4 47.5 1.0 CA A:ALA93 3.9 41.5 1.0 CB A:ALA93 3.9 43.6 1.0 CG B:PHE121 4.0 34.6 1.0 C A:ALA93 4.2 42.4 1.0 CB A:TRP94 4.2 52.3 1.0 CA A:TRP94 4.4 48.8 1.0 CD2 B:PHE121 4.5 34.1 1.0 CA B:PHE121 4.6 34.9 1.0 C B:PHE121 4.6 38.2 1.0 O B:PHE121 4.6 38.8 1.0 CD1 B:PHE121 4.8 31.1 1.0 O A:TRP94 4.9 59.7 1.0

Chlorine binding site 5 out of 5 in the Zn-Bound Form of Cupriavidus Metallidurans CH34 Cnrxs


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Zn-Bound Form of Cupriavidus Metallidurans CH34 Cnrxs within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1149 b:30.4 occ:0.30 N B:ALA53 3.0 56.3 1.0 CB B:ASP52 3.3 50.6 1.0 CB B:ALA53 3.7 61.6 1.0 CA B:ASP52 3.7 51.5 1.0 C B:ASP52 3.8 48.6 1.0 CA B:ALA53 3.9 59.4 1.0 CG B:ASP52 4.5 54.1 1.0 OD1 B:ASP52 4.9 52.7 1.0 O B:ASP52 5.0 51.8 1.0

J.Trepreau, E.Girard, A.P.Maillard, E.De Rosny, I.Petit-Haertlein, R.Kahn, J.Coves. Structural Basis For Metal Sensing By Cnrx. J.Mol.Biol. V. 408 766 2011.
ISSN: ISSN 0022-2836
PubMed: 21414325
DOI: 10.1016/J.JMB.2011.03.014