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Chlorine in PDB 2yoz: Catalytic Domain of Mouse 2',3'-Cyclic Nucleotide 3'- Phosphodiesterase, Crystallized with 2'-Amps

Enzymatic activity of Catalytic Domain of Mouse 2',3'-Cyclic Nucleotide 3'- Phosphodiesterase, Crystallized with 2'-Amps

All present enzymatic activity of Catalytic Domain of Mouse 2',3'-Cyclic Nucleotide 3'- Phosphodiesterase, Crystallized with 2'-Amps:
3.1.4.37;

Protein crystallography data

The structure of Catalytic Domain of Mouse 2',3'-Cyclic Nucleotide 3'- Phosphodiesterase, Crystallized with 2'-Amps, PDB code: 2yoz was solved by M.Myllykoski, A.Raasakka, M.Lehtimaki, H.Han, P.Kursula, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 17.00 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 38.400, 47.880, 51.150, 90.00, 94.45, 90.00
R / Rfree (%) 17.5 / 22.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Catalytic Domain of Mouse 2',3'-Cyclic Nucleotide 3'- Phosphodiesterase, Crystallized with 2'-Amps (pdb code 2yoz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Catalytic Domain of Mouse 2',3'-Cyclic Nucleotide 3'- Phosphodiesterase, Crystallized with 2'-Amps, PDB code: 2yoz:

Chlorine binding site 1 out of 1 in 2yoz

Go back to Chlorine Binding Sites List in 2yoz
Chlorine binding site 1 out of 1 in the Catalytic Domain of Mouse 2',3'-Cyclic Nucleotide 3'- Phosphodiesterase, Crystallized with 2'-Amps


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Catalytic Domain of Mouse 2',3'-Cyclic Nucleotide 3'- Phosphodiesterase, Crystallized with 2'-Amps within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1385

b:41.9
occ:1.00
 HE1 A:TRP289 2.4 27.7 1.0
H A:SER297 2.5 40.3 1.0
HG A:SER297 2.7 42.3 1.0
H A:GLY305 2.8 27.3 1.0
OG A:SER297 2.8 35.3 1.0
HD13 A:LEU293 3.0 27.4 1.0
HB2 A:ARG307 3.1 38.0 1.0
NE1 A:TRP289 3.2 23.1 1.0
H A:ARG307 3.3 26.0 1.0
N A:SER297 3.3 33.6 1.0
HA A:PRO296 3.5 43.3 1.0
HB2 A:SER297 3.5 40.8 1.0
HB3 A:ARG307 3.5 38.0 1.0
HA2 A:GLY305 3.6 24.8 1.0
N A:GLY305 3.6 22.8 1.0
CB A:SER297 3.6 34.0 1.0
HZ2 A:TRP289 3.7 25.6 1.0
HD3 A:ARG307 3.8 46.5 1.0
CB A:ARG307 3.8 31.7 1.0
H A:SER306 3.9 24.3 1.0
CD1 A:LEU293 3.9 22.9 1.0
CA A:GLY305 4.0 20.7 1.0
CE2 A:TRP289 4.0 21.9 1.0
CA A:SER297 4.1 33.4 1.0
HD11 A:LEU293 4.1 27.4 1.0
HD12 A:LEU293 4.1 27.4 1.0
N A:ARG307 4.1 21.6 1.0
CD1 A:TRP289 4.2 23.8 1.0
CA A:PRO296 4.2 36.0 1.0
HA A:PRO304 4.2 41.7 1.0
N A:SER306 4.2 20.3 1.0
C A:PRO296 4.2 38.8 1.0
CZ2 A:TRP289 4.2 21.3 1.0
O A:HOH2068 4.2 24.6 1.0
HD1 A:TRP289 4.3 28.6 1.0
HD22 A:LEU328 4.3 43.3 1.0
C A:GLY305 4.3 21.0 1.0
HB2 A:PRO296 4.4 42.9 1.0
HA A:SER297 4.5 40.1 1.0
HB3 A:SER297 4.5 40.8 1.0
HB3 A:PRO296 4.6 42.9 1.0
CA A:ARG307 4.6 24.0 1.0
CD A:ARG307 4.6 38.8 1.0
HB2 A:LEU293 4.7 35.1 1.0
CB A:PRO296 4.7 35.7 1.0
O A:HOH2064 4.7 32.0 1.0
C A:PRO304 4.7 28.2 1.0
HD12 A:LEU328 4.8 37.9 1.0
CG A:ARG307 4.9 38.4 1.0
HA3 A:GLY305 4.9 24.8 1.0
CA A:PRO304 4.9 34.7 1.0
H A:ALA298 5.0 43.5 1.0

Reference:

M.Myllykoski, A.Raasakka, M.Lehtimaki, H.Han, I.Kursula, P.Kursula. Crystallographic Analysis of the Reaction Cycle of 2',3'-Cyclic Nucleotide 3'-Phosphodiesterase, A Unique Member of the 2H Phosphoesterase Family J.Mol.Biol. V. 425 4307 2013.
ISSN: ISSN 0022-2836
PubMed: 23831225
DOI: 10.1016/J.JMB.2013.06.012
Page generated: Fri Jul 11 02:44:53 2025

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