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Chlorine in PDB 2z0g: The Crystal Structure of Pii Protein

Protein crystallography data

The structure of The Crystal Structure of Pii Protein, PDB code: 2z0g was solved by H.Sakai, A.Shinkai, Y.Kitamura, S.Kuramitsu, S.Yokoyama, Rikenstructural Genomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.03 / 2.10
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 114.398, 114.398, 70.067, 90.00, 90.00, 120.00
R / Rfree (%) 18.6 / 23

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Crystal Structure of Pii Protein (pdb code 2z0g). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the The Crystal Structure of Pii Protein, PDB code: 2z0g:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2z0g

Go back to Chlorine Binding Sites List in 2z0g
Chlorine binding site 1 out of 2 in the The Crystal Structure of Pii Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Crystal Structure of Pii Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl116

b:26.9
occ:1.00
NZ B:LYS3 3.1 23.8 1.0
NZ A:LYS3 3.1 23.6 1.0
NZ C:LYS3 3.1 23.9 1.0
CE A:LYS3 3.4 30.5 1.0
CE B:LYS3 3.4 29.8 1.0
CE C:LYS3 3.4 30.0 1.0
CD1 B:ILE94 4.1 26.6 1.0
CD1 A:ILE94 4.1 27.5 1.0
CD1 C:ILE94 4.1 27.1 1.0
O4 A:PO4113 4.2 55.4 1.0
O2 A:PO4113 4.2 54.9 1.0
O3 A:PO4113 4.3 55.2 1.0
CG2 C:ILE94 4.4 18.8 1.0
CG2 B:ILE94 4.4 20.3 1.0
CG2 A:ILE94 4.4 19.0 1.0
P A:PO4113 4.6 59.8 1.0
OE1 B:GLU5 4.7 29.9 1.0
OE1 A:GLU5 4.7 28.4 1.0
OE1 C:GLU5 4.7 29.4 1.0
CD A:LYS3 4.7 26.1 1.0
CD B:LYS3 4.7 26.9 1.0
CD C:LYS3 4.8 27.3 1.0
CG1 B:ILE94 4.9 23.8 1.0
CG1 C:ILE94 5.0 23.3 1.0
CG1 A:ILE94 5.0 23.4 1.0

Chlorine binding site 2 out of 2 in 2z0g

Go back to Chlorine Binding Sites List in 2z0g
Chlorine binding site 2 out of 2 in the The Crystal Structure of Pii Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Crystal Structure of Pii Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl116

b:26.2
occ:0.33
NZ D:LYS3 3.0 23.9 1.0
CE D:LYS3 3.3 28.9 1.0
O2 D:PO4113 4.1 96.3 0.3
O3 D:PO4113 4.1 96.3 0.3
O4 D:PO4113 4.1 96.3 0.3
CD1 D:ILE94 4.1 27.4 1.0
P D:PO4113 4.3 96.0 0.3
CG2 D:ILE94 4.5 20.6 1.0
OE1 D:GLU5 4.6 28.1 1.0
CD D:LYS3 4.7 25.8 1.0

Reference:

H.Sakai, A.Shinkai, Y.Kitamura, S.Kuramitsu, S.Yokoyama. The Crystal Structure of Pii Protein To Be Published.
Page generated: Sat Jul 20 15:20:33 2024

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