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Chlorine in PDB 2z12: Structure of the Transformed Monoclinic Lysozyme By Controlled Dehydration

Enzymatic activity of Structure of the Transformed Monoclinic Lysozyme By Controlled Dehydration

All present enzymatic activity of Structure of the Transformed Monoclinic Lysozyme By Controlled Dehydration:
3.2.1.17;

Protein crystallography data

The structure of Structure of the Transformed Monoclinic Lysozyme By Controlled Dehydration, PDB code: 2z12 was solved by K.Harata, T.Akiba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.15
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 25.947, 58.021, 30.580, 90.00, 110.40, 90.00
R / Rfree (%) 16.8 / 20.5

Other elements in 2z12:

The structure of Structure of the Transformed Monoclinic Lysozyme By Controlled Dehydration also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of the Transformed Monoclinic Lysozyme By Controlled Dehydration (pdb code 2z12). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Structure of the Transformed Monoclinic Lysozyme By Controlled Dehydration, PDB code: 2z12:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 2z12

Go back to Chlorine Binding Sites List in 2z12
Chlorine binding site 1 out of 4 in the Structure of the Transformed Monoclinic Lysozyme By Controlled Dehydration


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the Transformed Monoclinic Lysozyme By Controlled Dehydration within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl131

b:14.3
occ:1.00
 OG A:SER24 3.0 9.1 1.0
N A:GLY26 3.1 7.0 1.0
CG A:GLN121 3.3 19.4 0.5
CB A:SER24 3.5 7.9 1.0
CG A:GLN121 3.6 21.0 0.5
CA A:GLY26 3.7 7.1 1.0
N A:LEU25 3.8 6.9 1.0
CA A:GLN121 3.8 12.5 1.0
CD1 A:ILE124 4.0 15.8 1.0
C A:SER24 4.0 6.5 1.0
C A:LEU25 4.1 6.4 1.0
CB A:GLN121 4.2 17.3 0.5
N A:GLN121 4.2 9.0 1.0
CB A:GLN121 4.2 15.4 0.5
CA A:SER24 4.3 6.9 1.0
CA A:LEU25 4.4 6.0 1.0
CG1 A:ILE124 4.4 15.6 1.0
O A:SER24 4.5 7.0 1.0
CD A:GLN121 4.5 11.9 0.5
C A:VAL120 4.5 8.8 1.0
CG2 A:VAL120 4.6 12.2 1.0
O A:VAL120 4.6 9.1 1.0
CB A:LEU25 4.6 7.9 1.0
C A:GLY26 4.7 7.0 1.0
CD A:GLN121 4.7 26.9 0.5
N A:ASN27 4.8 6.6 1.0

Chlorine binding site 2 out of 4 in 2z12

Go back to Chlorine Binding Sites List in 2z12
Chlorine binding site 2 out of 4 in the Structure of the Transformed Monoclinic Lysozyme By Controlled Dehydration


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the Transformed Monoclinic Lysozyme By Controlled Dehydration within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl132

b:13.5
occ:1.00
 O A:HOH175 3.1 16.8 1.0
NE1 A:TRP63 3.2 13.2 1.0
O A:HOH146 3.3 10.3 1.0
O A:HOH141 3.4 9.5 1.0
CD1 A:TRP63 3.7 10.2 1.0
CB A:ASN59 4.1 8.6 1.0
CE2 A:TRP63 4.4 9.5 1.0
CB A:ALA107 4.5 12.7 1.0
O A:ALA107 4.7 12.2 1.0
O A:HOH135 4.7 12.9 1.0
O A:HOH137 4.9 12.8 1.0
CG A:ASN59 4.9 7.1 1.0
OD1 A:ASN59 4.9 8.4 1.0

Chlorine binding site 3 out of 4 in 2z12

Go back to Chlorine Binding Sites List in 2z12
Chlorine binding site 3 out of 4 in the Structure of the Transformed Monoclinic Lysozyme By Controlled Dehydration


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of the Transformed Monoclinic Lysozyme By Controlled Dehydration within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl133

b:17.3
occ:1.00
 NH2 A:ARG14 3.0 25.6 1.0
NE2 A:HIS15 3.3 15.8 1.0
CD2 A:HIS15 3.8 13.6 1.0
O A:HOH187 3.9 18.8 1.0
CZ A:ARG14 4.0 38.1 1.0
NE A:ARG14 4.2 40.2 1.0
CB A:ALA11 4.2 8.6 1.0
OG1 A:THR89 4.5 18.2 1.0
CE1 A:HIS15 4.5 17.9 1.0
CG1 A:ILE88 4.6 10.4 1.0
CA A:ALA11 4.9 10.0 1.0

Chlorine binding site 4 out of 4 in 2z12

Go back to Chlorine Binding Sites List in 2z12
Chlorine binding site 4 out of 4 in the Structure of the Transformed Monoclinic Lysozyme By Controlled Dehydration


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of the Transformed Monoclinic Lysozyme By Controlled Dehydration within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl134

b:16.6
occ:1.00
 O A:HOH217 2.7 27.6 1.0
N A:SER81 3.2 8.8 1.0
O A:ASN65 3.3 10.9 1.0
N A:CYS80 3.3 9.3 1.0
CB A:SER81 3.7 10.8 0.5
CB A:SER81 3.8 10.0 0.5
CB A:PRO79 3.8 14.0 1.0
OG A:SER81 3.9 11.2 0.5
C A:PRO79 4.0 10.5 1.0
C A:CYS80 4.0 7.7 1.0
CA A:CYS80 4.0 7.7 1.0
CA A:PRO79 4.0 8.7 1.0
CA A:SER81 4.0 9.1 1.0
CB A:CYS80 4.1 9.0 1.0
CA A:ASP66 4.1 10.3 1.0
C A:ASN65 4.4 9.9 1.0
CB A:ASP66 4.5 10.1 1.0
N A:ASP66 4.7 10.9 1.0
O A:PRO79 4.9 8.7 1.0
C A:ASP66 5.0 16.1 1.0
OG A:SER81 5.0 10.1 0.5

Reference:

K.Harata, T.Akiba. Effect of A Sodium Ion on the Dehydration-Induced Phase Transition of Monoclinic Lysozyme Crystals. Acta Crystallogr.,Sect.D V. 63 1016 2007.
ISSN: ISSN 0907-4449
PubMed: 17704571
DOI: 10.1107/S0907444907031319
Page generated: Sat Jul 20 15:21:39 2024

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