Atomistry » Chlorine » PDB 2z0g-2zgd » 2z18
Atomistry »
  Chlorine »
    PDB 2z0g-2zgd »
      2z18 »

Chlorine in PDB 2z18: Phase Transition of Monoclinic Lysozyme Crystal Soaked in A 10% Nacl Solution

Enzymatic activity of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A 10% Nacl Solution

All present enzymatic activity of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A 10% Nacl Solution:
3.2.1.17;

Protein crystallography data

The structure of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A 10% Nacl Solution, PDB code: 2z18 was solved by K.Harata, T.Akiba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.15
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 26.622, 60.588, 31.223, 90.00, 111.44, 90.00
R / Rfree (%) 15.6 / 17.6

Other elements in 2z18:

The structure of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A 10% Nacl Solution also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Phase Transition of Monoclinic Lysozyme Crystal Soaked in A 10% Nacl Solution (pdb code 2z18). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Phase Transition of Monoclinic Lysozyme Crystal Soaked in A 10% Nacl Solution, PDB code: 2z18:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 2z18

Go back to Chlorine Binding Sites List in 2z18
Chlorine binding site 1 out of 4 in the Phase Transition of Monoclinic Lysozyme Crystal Soaked in A 10% Nacl Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A 10% Nacl Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl132

b:7.4
occ:1.00
ND2 A:ASN59 3.2 10.3 1.0
NE1 A:TRP63 3.2 5.1 1.0
O A:HOH139 3.3 6.5 1.0
CD1 A:TRP62 3.7 7.9 1.0
CB A:ASN59 3.7 6.5 1.0
CD1 A:TRP63 3.8 6.3 1.0
CG A:ASN59 3.9 7.6 1.0
CE2 A:TRP63 4.4 4.8 1.0
NE1 A:TRP62 4.6 7.7 1.0
CG A:TRP62 4.6 5.2 1.0
CB A:TRP62 4.7 5.5 1.0
CZ2 A:TRP63 4.9 6.5 1.0
O A:HOH145 5.0 7.7 1.0

Chlorine binding site 2 out of 4 in 2z18

Go back to Chlorine Binding Sites List in 2z18
Chlorine binding site 2 out of 4 in the Phase Transition of Monoclinic Lysozyme Crystal Soaked in A 10% Nacl Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A 10% Nacl Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl133

b:20.6
occ:1.00
NH2 A:ARG21 3.1 10.6 1.0
CA A:ARG21 3.5 4.2 1.0
N A:GLY22 3.6 6.1 1.0
NE A:ARG21 3.6 10.9 1.0
C A:ARG21 3.7 4.6 1.0
CZ A:ARG21 3.7 9.9 1.0
N A:ARG21 4.0 5.1 1.0
CA A:GLY22 4.4 6.4 1.0
O A:ARG21 4.4 5.6 1.0
CB A:ARG21 4.7 5.8 1.0
O A:ASN19 4.7 7.6 1.0
CD A:ARG21 4.8 8.1 1.0
NH1 A:ARG21 5.0 13.0 1.0

Chlorine binding site 3 out of 4 in 2z18

Go back to Chlorine Binding Sites List in 2z18
Chlorine binding site 3 out of 4 in the Phase Transition of Monoclinic Lysozyme Crystal Soaked in A 10% Nacl Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A 10% Nacl Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl134

b:21.7
occ:1.00
O A:HOH226 3.0 20.9 1.0
O A:HOH250 3.6 32.8 1.0
CE2 A:PHE38 3.8 7.7 1.0
CD A:LYS33 3.8 8.7 1.0
CE A:LYS33 3.9 15.1 1.0
NZ A:LYS33 4.3 21.8 1.0
CB A:ARG5 4.4 5.6 1.0
CZ A:PHE38 4.4 6.5 1.0
CZ3 A:TRP123 4.6 9.7 1.0
CD A:ARG5 4.7 5.3 1.0
CD2 A:PHE38 4.7 6.4 1.0
O A:HOH178 4.8 11.5 1.0
NE A:ARG5 5.0 6.3 1.0

Chlorine binding site 4 out of 4 in 2z18

Go back to Chlorine Binding Sites List in 2z18
Chlorine binding site 4 out of 4 in the Phase Transition of Monoclinic Lysozyme Crystal Soaked in A 10% Nacl Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Phase Transition of Monoclinic Lysozyme Crystal Soaked in A 10% Nacl Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl135

b:13.8
occ:1.00
OD1 A:ASN65 2.7 17.9 1.0
O A:HOH141 3.0 7.3 1.0
N A:GLY67 3.2 7.2 1.0
O A:THR69 3.3 9.6 1.0
N A:THR69 3.3 9.7 1.0
O A:HOH142 3.4 6.3 1.0
CA A:GLY67 3.4 7.0 1.0
C A:GLY67 3.4 10.4 1.0
N A:ARG68 3.6 7.9 1.0
C A:THR69 3.7 13.4 1.0
O A:HOH278 3.7 22.5 1.0
OG A:SER72 3.8 7.8 1.0
CG A:ASN65 3.9 17.9 1.0
O A:GLY67 4.0 9.9 1.0
CA A:THR69 4.1 10.0 1.0
OG1 A:THR69 4.1 10.4 1.0
O A:HOH293 4.2 27.2 0.8
N A:ASP66 4.3 6.5 1.0
OD1 A:ASP66 4.3 6.8 1.0
C A:ARG68 4.3 9.3 1.0
C A:ASP66 4.4 6.2 1.0
NA A:NA131 4.4 5.4 1.0
N A:PRO70 4.4 15.5 1.0
CA A:ARG68 4.6 8.1 1.0
CA A:ASN65 4.7 4.9 1.0
CB A:THR69 4.7 10.3 1.0
ND2 A:ASN65 4.8 20.0 1.0
O A:HOH158 4.8 9.4 1.0
CA A:PRO70 4.8 15.8 1.0
O A:HOH214 4.8 16.3 1.0
CB A:ASN65 4.9 8.0 1.0
CA A:ASP66 4.9 6.2 1.0
C A:ASN65 4.9 5.5 1.0

Reference:

K.Harata, T.Akiba. Effect of A Sodium Ion on the Dehydration-Induced Phase Transition of Monoclinic Lysozyme Crystals. Acta Crystallogr.,Sect.D V. 63 1016 2007.
ISSN: ISSN 0907-4449
PubMed: 17704571
DOI: 10.1107/S0907444907031319
Page generated: Sat Jul 20 15:23:05 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy