Atomistry » Chlorine » PDB 3a4p-3akf » 3a91
Atomistry »
  Chlorine »
    PDB 3a4p-3akf »
      3a91 »

Chlorine in PDB 3a91: Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3

Enzymatic activity of Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3

All present enzymatic activity of Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3, PDB code: 3a91 was solved by S.Abe, T.Koshiyama, T.Ohki, T.Hikage, Y.Watanabe, T.Ueno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.41 / 1.55
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.122, 78.122, 37.151, 90.00, 90.00, 90.00
R / Rfree (%) 18.6 / 20.7

Other elements in 3a91:

The structure of Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3 also contains other interesting chemical elements:

Rhodium (Rh) 1 atom
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3 (pdb code 3a91). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3, PDB code: 3a91:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in 3a91

Go back to Chlorine Binding Sites List in 3a91
Chlorine binding site 1 out of 7 in the Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl131

b:17.1
occ:1.00
 OH A:TYR23 3.0 12.1 1.0
CZ A:TYR23 3.7 12.2 1.0
CE2 A:TYR23 3.7 10.5 1.0
CA A:GLY104 4.1 12.2 1.0
O A:ARG21 4.5 15.3 1.0
N A:GLY104 4.7 13.1 1.0
CE1 A:TYR23 4.9 11.5 1.0
CD2 A:TYR23 4.9 12.2 1.0

Chlorine binding site 2 out of 7 in 3a91

Go back to Chlorine Binding Sites List in 3a91
Chlorine binding site 2 out of 7 in the Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl132

b:21.2
occ:1.00
 O A:HOH179 3.1 24.8 1.0
N A:THR69 3.2 16.1 1.0
O A:HOH147 3.2 14.3 1.0
O A:HOH247 3.2 35.4 1.0
O A:THR69 3.3 18.2 1.0
N A:ARG68 3.5 15.4 1.0
C A:GLY67 3.6 15.9 1.0
C A:THR69 3.6 17.8 1.0
CA A:GLY67 3.6 14.8 1.0
ND2 A:ASN65 3.7 14.7 1.0
N A:GLY67 3.7 14.2 1.0
OG A:SER72 3.7 21.2 1.0
CA A:THR69 3.8 16.8 1.0
O A:HOH155 4.0 16.8 1.0
O A:GLY67 4.2 17.1 1.0
C A:ARG68 4.2 16.6 1.0
CB A:THR69 4.2 17.0 1.0
CA A:ARG68 4.3 15.8 1.0
OD1 A:ASP66 4.3 13.0 1.0
N A:PRO70 4.5 19.0 1.0
NA A:NA130 4.6 16.1 1.0
OG1 A:THR69 4.7 15.3 1.0
C A:ASP66 4.8 13.1 1.0
N A:ASP66 4.9 12.1 1.0
O A:HOH184 4.9 21.2 0.5
CG A:ASN65 5.0 14.9 1.0
CB A:SER72 5.0 20.8 1.0

Chlorine binding site 3 out of 7 in 3a91

Go back to Chlorine Binding Sites List in 3a91
Chlorine binding site 3 out of 7 in the Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl133

b:21.5
occ:1.00
 O A:HOH241 2.8 35.4 1.0
OG A:SER24 3.1 16.2 1.0
N A:GLY26 3.1 13.8 1.0
CB A:SER24 3.5 15.2 1.0
CA A:GLY26 3.5 12.6 1.0
CA A:GLN121 3.6 17.8 1.0
CD1 A:ILE124 3.9 23.9 1.0
CB A:GLN121 4.0 18.9 1.0
N A:GLN121 4.1 16.8 1.0
CG A:GLN121 4.2 23.4 1.0
N A:LEU25 4.2 14.0 1.0
CG1 A:ILE124 4.3 20.7 1.0
C A:SER24 4.3 14.5 1.0
C A:LEU25 4.3 13.8 1.0
O A:VAL120 4.3 16.4 1.0
CG2 A:VAL120 4.3 16.8 1.0
C A:VAL120 4.4 16.5 1.0
CA A:SER24 4.5 14.2 1.0
C A:GLY26 4.6 12.4 1.0
CA A:LEU25 4.7 14.1 1.0
N A:ASN27 4.7 11.8 1.0
O A:SER24 4.8 15.1 1.0
C A:GLN121 4.8 16.8 1.0
CB A:LEU25 5.0 14.5 1.0
O A:GLN121 5.0 17.0 1.0

Chlorine binding site 4 out of 7 in 3a91

Go back to Chlorine Binding Sites List in 3a91
Chlorine binding site 4 out of 7 in the Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl134

b:31.9
occ:1.00
 NZ A:LYS33 3.6 20.4 1.0
CE2 A:PHE38 3.6 14.1 1.0
CE A:LYS33 3.9 18.2 1.0
CZ3 A:TRP123 4.0 17.1 1.0
CD A:LYS33 4.2 15.8 1.0
CZ A:PHE38 4.4 13.9 1.0
CD A:ARG5 4.4 19.2 1.0
CB A:ARG5 4.4 19.0 1.0
CD2 A:PHE38 4.6 15.4 1.0
CG A:ARG5 4.8 19.7 1.0
CE3 A:TRP123 4.8 17.4 1.0
NE A:ARG5 4.9 23.1 1.0
CH2 A:TRP123 4.9 16.8 1.0

Chlorine binding site 5 out of 7 in 3a91

Go back to Chlorine Binding Sites List in 3a91
Chlorine binding site 5 out of 7 in the Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl135

b:28.4
occ:1.00
 O A:HOH169 3.0 23.7 1.0
OD1 A:ASN65 3.3 21.2 1.0
CB A:PRO79 3.7 14.1 1.0
CA A:PRO79 3.8 14.3 1.0
CB A:ASN65 3.9 13.5 1.0
CG A:ASN65 4.0 14.9 1.0
N A:PRO79 4.0 15.2 1.0
CD A:PRO79 4.3 14.9 1.0
O A:ASN65 4.4 12.1 1.0
CG A:PRO79 4.4 15.7 1.0
C A:ILE78 4.6 15.9 1.0
O A:ILE78 4.8 16.0 1.0
ND2 A:ASN74 4.9 17.1 1.0
CA A:ASN65 5.0 12.9 1.0
C A:ASN65 5.0 12.1 1.0

Chlorine binding site 6 out of 7 in 3a91

Go back to Chlorine Binding Sites List in 3a91
Chlorine binding site 6 out of 7 in the Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl136

b:34.1
occ:1.00
 RH A:RH3138 3.0 34.8 0.4
N A:ILE88 3.3 16.9 1.0
CG1 A:ILE88 3.6 17.1 1.0
O A:HOH207 3.7 31.5 1.0
NH1 A:ARG14 3.9 29.1 1.0
CA A:ASP87 3.9 18.8 1.0
OD1 A:ASP87 4.0 23.9 1.0
NE2 A:HIS15 4.0 23.9 1.0
C A:ASP87 4.1 18.1 1.0
O A:SER86 4.1 19.7 1.0
CB A:ILE88 4.2 16.6 1.0
CB A:ALA11 4.2 17.2 1.0
CA A:ILE88 4.2 16.9 1.0
CG2 A:ILE88 4.3 17.3 1.0
CZ A:PHE3 4.4 17.0 1.0
CD1 A:ILE88 4.5 17.9 1.0
CD2 A:HIS15 4.5 23.0 1.0
CG A:ASP87 4.6 23.1 1.0
CB A:ASP87 4.7 19.6 1.0
N A:ASP87 4.9 18.5 1.0
CE2 A:PHE3 4.9 15.8 1.0
N A:THR89 4.9 16.6 1.0
C A:SER86 4.9 18.7 1.0
C A:ILE88 5.0 16.8 1.0

Chlorine binding site 7 out of 7 in 3a91

Go back to Chlorine Binding Sites List in 3a91
Chlorine binding site 7 out of 7 in the Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl137

b:40.5
occ:1.00
 N A:ASN74 3.0 17.6 1.0
NE A:ARG73 3.2 28.2 1.0
C A:ASN74 3.7 16.6 1.0
CB A:ARG73 3.7 19.7 1.0
O A:ASN74 3.8 16.4 1.0
CA A:ASN74 3.8 16.5 1.0
CD A:ARG73 3.8 24.5 1.0
CA A:ARG73 3.9 19.0 1.0
C A:ARG73 4.0 18.5 1.0
CB A:ASN74 4.1 16.4 1.0
N A:LEU75 4.2 17.1 1.0
CZ A:ARG73 4.2 28.9 1.0
CD2 A:LEU75 4.3 20.8 1.0
NH2 A:ARG73 4.4 30.3 1.0
CG A:ARG73 4.4 20.7 1.0
CA A:LEU75 4.7 17.4 1.0
O A:HOH227 4.8 34.5 1.0
CG A:LEU75 4.9 18.9 1.0

Reference:

T.Ueno, S.Abe, T.Koshiyama, T.Ohki, T.Hikage, Y.Watanabe. Elucidation of Metal-Ion Accumulation Induced By Hydrogen Bonds on Protein Surfaces By Using Porous Lysozyme Crystals Containing Rh(III) Ions As the Model Surfaces Chemistry V. 16 2730 2010.
ISSN: ISSN 0947-6539
PubMed: 20146274
DOI: 10.1002/CHEM.200903269
Page generated: Fri Jul 11 03:02:13 2025

Last articles

Mg in 7MNP
Mg in 7MNQ
Mg in 7MLJ
Mg in 7MLI
Mg in 7MKY
Mg in 7MLB
Mg in 7ML4
Mg in 7ML2
Mg in 7ML1
Mg in 7ML0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy