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Chlorine in PDB 3bhx: X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Transition State Analog of Asp-Glu

Enzymatic activity of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Transition State Analog of Asp-Glu

All present enzymatic activity of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Transition State Analog of Asp-Glu:
3.4.17.21;

Protein crystallography data

The structure of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Transition State Analog of Asp-Glu, PDB code: 3bhx was solved by J.Lubkowski, C.Barinka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.60
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 101.554, 130.258, 159.192, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 20.2

Other elements in 3bhx:

The structure of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Transition State Analog of Asp-Glu also contains other interesting chemical elements:

Calcium (Ca) 1 atom
Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Transition State Analog of Asp-Glu (pdb code 3bhx). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Transition State Analog of Asp-Glu, PDB code: 3bhx:

Chlorine binding site 1 out of 1 in 3bhx

Go back to Chlorine Binding Sites List in 3bhx
Chlorine binding site 1 out of 1 in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Transition State Analog of Asp-Glu


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Transition State Analog of Asp-Glu within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1754

b:21.2
occ:1.00
 O A:HOH2426 3.2 25.6 0.7
O A:HOH1788 3.2 19.6 1.0
ND2 A:ASN451 3.2 17.8 1.0
NE A:ARG534 3.3 25.2 1.0
NH1 A:ARG534 3.4 23.7 1.0
N A:ASP453 3.4 15.8 1.0
NH1 A:ARG536 3.4 19.7 0.3
CB A:ASP453 3.8 16.4 1.0
CZ A:ARG534 3.8 23.8 1.0
CB A:ARG534 3.8 17.1 1.0
NH2 A:ARG580 4.0 17.9 1.0
CB A:ASN451 4.0 15.7 1.0
CA A:ASP453 4.0 15.7 1.0
CG A:ASN451 4.1 15.9 1.0
N A:ALA452 4.3 15.8 1.0
CZ A:ARG536 4.3 17.8 0.3
C A:ASP453 4.3 18.1 1.0
C A:ASN451 4.4 17.1 1.0
NE A:ARG536 4.4 19.0 0.3
O A:ASP453 4.4 18.0 1.0
C A:ALA452 4.4 15.4 1.0
CD A:ARG534 4.4 23.7 1.0
CA A:ALA452 4.4 16.6 1.0
CD A:ARG536 4.5 22.2 0.7
CG A:ARG534 4.5 17.9 1.0
O A:ASN451 4.5 18.2 1.0
NE A:ARG536 4.7 22.9 0.7
O A:SER454 4.7 19.4 1.0
CZ A:ARG580 4.8 17.9 1.0
O A:ALA535 4.8 17.6 1.0
CA A:ARG534 4.8 17.9 1.0
ND2 A:ASN519 4.8 15.8 1.0
CA A:ASN451 4.9 15.2 1.0
N A:ALA535 4.9 16.9 1.0
N A:SER454 5.0 17.5 1.0

Reference:

C.Barinka, K.Hlouchova, M.Rovenska, P.Majer, M.Dauter, N.Hin, Y.S.Ko, T.Tsukamoto, B.S.Slusher, J.Konvalinka, J.Lubkowski. Structural Basis of Interactions Between Human Glutamate Carboxypeptidase II and Its Substrate Analogs J.Mol.Biol. V. 376 1438 2008.
ISSN: ISSN 0022-2836
PubMed: 18234225
DOI: 10.1016/J.JMB.2007.12.066
Page generated: Fri Jul 11 03:27:19 2025

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