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Chlorine in PDB 3c7t: Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex with Tungstate

Protein crystallography data

The structure of Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex with Tungstate, PDB code: 3c7t was solved by Y.Chen, N.Carpino, N.Nassar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.20 / 1.76
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 62.901, 134.410, 135.188, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 21.1

Other elements in 3c7t:

The structure of Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex with Tungstate also contains other interesting chemical elements:

Tungsten (W) 4 atoms
Magnesium (Mg) 1 atom
Iodine (I) 6 atoms
Sodium (Na) 1 atom

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 15;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex with Tungstate (pdb code 3c7t). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 15 binding sites of Chlorine where determined in the Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex with Tungstate, PDB code: 3c7t:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 15 in 3c7t

Go back to Chlorine Binding Sites List in 3c7t
Chlorine binding site 1 out of 15 in the Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex with Tungstate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl9

b:26.5
occ:1.00
 O C:HOH425 2.5 34.2 1.0
O A:HOH388 2.9 29.4 1.0
N A:VAL92 3.8 20.2 1.0
N A:TRP91 3.8 21.1 1.0
CD A:PRO93 3.8 20.3 1.0
CA A:PRO90 3.9 22.2 1.0
C A:PRO90 4.0 21.1 1.0
CB A:VAL92 4.0 20.1 1.0
CG2 A:VAL92 4.1 21.3 1.0
CD1 A:TRP91 4.1 19.1 1.0
CG2 A:VAL123 4.2 22.9 1.0
O A:GLY89 4.3 21.6 1.0
NE1 A:TRP91 4.4 19.1 1.0
CG1 A:VAL123 4.4 22.0 1.0
CA A:VAL92 4.4 19.9 1.0
O A:HOH361 4.7 21.1 1.0
O A:PRO90 4.7 20.7 1.0
C A:TRP91 4.8 20.4 1.0
CB A:PRO90 4.8 22.4 1.0
CB A:VAL123 4.8 21.4 1.0
CA A:TRP91 4.8 20.6 1.0
CG A:TRP91 4.8 20.2 1.0
CG A:PRO93 4.9 21.5 1.0
O C:HOH479 4.9 29.4 1.0
N A:PRO93 4.9 20.4 1.0
N A:PRO90 5.0 21.8 1.0

Chlorine binding site 2 out of 15 in 3c7t

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Chlorine binding site 2 out of 15 in the Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex with Tungstate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl15

b:42.7
occ:1.00
 CA A:GLY118 3.6 27.4 1.0
C A:GLY118 3.8 27.7 1.0
N A:LYS119 4.0 28.0 1.0
CE2 A:TYR122 4.1 24.2 1.0
O A:HOH424 4.2 34.6 1.0
O A:ALA113 4.4 25.1 1.0
O A:GLY118 4.4 27.4 1.0
N A:ARG115 4.5 25.6 1.0
CD2 A:TYR122 4.5 24.0 1.0
CE2 A:PHE96 4.5 27.8 1.0
CZ A:PHE96 4.6 27.0 1.0
CA A:HIS114 4.6 26.6 1.0
N A:GLY118 4.7 27.3 1.0
O A:ARG115 4.7 25.6 1.0
CG A:ARG115 4.8 23.7 1.0
CA A:LYS119 4.8 27.6 1.0

Chlorine binding site 3 out of 15 in 3c7t

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Chlorine binding site 3 out of 15 in the Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex with Tungstate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl332

b:26.6
occ:1.00
 O A:HOH445 1.4 26.1 1.0
O A:HOH446 2.2 41.3 1.0
O A:HOH389 3.4 31.7 1.0
O A:HOH354 4.1 26.6 1.0
CE A:LYS292 4.1 24.2 1.0
CB A:ILE262 4.2 23.4 1.0
CG A:LYS292 4.2 21.9 1.0
CB A:ALA261 4.3 22.7 1.0
N A:ILE262 4.3 22.9 1.0
CG C:PRO90 4.4 21.4 1.0
CD C:PRO90 4.4 20.7 1.0
CA A:ILE262 4.6 23.3 1.0
CD1 A:ILE262 4.7 28.2 1.0
CD A:LYS292 4.8 21.9 1.0
C A:ALA261 4.8 23.6 1.0
CB C:PRO90 4.8 20.1 1.0
O A:HOH413 4.9 36.8 1.0
CG1 A:ILE262 4.9 26.1 1.0
O C:HOH400 4.9 34.4 1.0

Chlorine binding site 4 out of 15 in 3c7t

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Chlorine binding site 4 out of 15 in the Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex with Tungstate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl5

b:48.0
occ:1.00
 CD A:LYS304 3.6 40.2 1.0
CA A:PRO305 3.7 36.5 1.0
CB A:LYS304 3.7 36.8 1.0
CG A:ARG275 3.8 46.5 1.0
CD1 A:TRP306 3.8 34.0 1.0
O A:LEU274 3.9 40.9 1.0
CG A:LYS304 3.9 38.1 1.0
CA A:ARG275 4.1 45.7 1.0
CB A:PRO305 4.1 36.3 1.0
NE1 A:TRP306 4.2 34.0 1.0
N A:TRP306 4.2 35.6 1.0
C A:LEU274 4.3 40.9 1.0
N A:ARG275 4.4 43.1 1.0
CB A:ARG275 4.5 45.6 1.0
CA A:LYS304 4.5 36.1 1.0
C A:PRO305 4.5 35.8 1.0
N A:PRO305 4.7 36.5 1.0
CG A:TRP306 4.7 33.9 1.0
CE A:LYS304 4.8 41.2 1.0

Chlorine binding site 5 out of 15 in 3c7t

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Chlorine binding site 5 out of 15 in the Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex with Tungstate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl7

b:22.9
occ:1.00
 O B:HOH420 2.8 31.0 1.0
O D:HOH359 2.9 19.6 1.0
N B:TRP91 3.7 14.5 1.0
N B:VAL92 3.7 14.4 1.0
CA B:PRO90 3.8 17.2 1.0
CD B:PRO93 3.8 18.3 1.0
C B:PRO90 3.9 16.5 1.0
CB B:VAL92 4.0 15.7 1.0
CD1 B:TRP91 4.0 16.4 1.0
CG2 B:VAL123 4.0 15.1 1.0
CG2 B:VAL92 4.2 15.2 1.0
O B:GLY89 4.3 18.2 1.0
NE1 B:TRP91 4.3 16.7 1.0
CG1 B:VAL123 4.4 19.0 1.0
CA B:VAL92 4.4 15.3 1.0
O B:HOH370 4.6 18.7 1.0
O B:PRO90 4.6 14.3 1.0
CA B:TRP91 4.7 15.5 1.0
C B:TRP91 4.7 14.8 1.0
CB B:VAL123 4.7 17.5 1.0
CG B:TRP91 4.7 15.6 1.0
CG B:PRO93 4.7 19.0 1.0
CB B:PRO90 4.7 18.1 1.0
N B:PRO90 4.8 18.3 1.0
O D:HOH497 4.8 34.4 1.0
N B:PRO93 4.9 17.3 1.0
C B:GLY89 5.0 18.2 1.0

Chlorine binding site 6 out of 15 in 3c7t

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Chlorine binding site 6 out of 15 in the Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex with Tungstate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl11

b:32.5
occ:1.00
 N B:ILE150 3.6 21.4 1.0
CB B:SER149 3.6 22.8 1.0
CA B:SER149 3.7 21.8 1.0
CG B:LEU172 3.9 20.3 1.0
O B:ILE150 4.0 21.9 1.0
CD2 B:LEU172 4.0 20.1 1.0
CA B:ALA174 4.1 19.0 1.0
C B:SER149 4.1 21.5 1.0
CD1 B:LEU172 4.2 22.8 1.0
O B:HOH441 4.3 33.1 1.0
O B:HOH352 4.3 23.5 1.0
CB B:ALA174 4.4 18.6 1.0
CA B:ILE150 4.7 20.8 1.0
C B:ILE150 4.7 21.7 1.0
N B:ALA174 4.8 18.4 1.0
O B:VAL148 4.9 22.1 1.0
N B:SER149 4.9 21.5 1.0
OG B:SER149 5.0 25.1 1.0
O B:LEU172 5.0 18.6 1.0

Chlorine binding site 7 out of 15 in 3c7t

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Chlorine binding site 7 out of 15 in the Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex with Tungstate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl3

b:26.6
occ:1.00
 O B:HOH474 1.3 17.8 1.0
O B:HOH475 2.0 34.9 1.0
O B:HOH375 3.4 27.1 1.0
CG D:PRO90 4.1 17.7 1.0
CG B:LYS292 4.2 21.0 1.0
CB B:ILE262 4.2 19.3 1.0
CB B:ALA261 4.2 17.1 1.0
CD D:PRO90 4.2 18.3 1.0
CE B:LYS292 4.2 21.4 1.0
N B:ILE262 4.3 17.7 1.0
O B:HOH406 4.5 23.6 1.0
CA B:ILE262 4.5 18.9 1.0
CB D:PRO90 4.6 17.9 1.0
CD1 B:ILE262 4.7 25.4 1.0
CD B:LYS292 4.7 21.0 1.0
C B:ALA261 4.8 18.5 1.0
O B:HOH365 4.9 27.5 1.0
CG1 B:ILE262 4.9 20.5 1.0

Chlorine binding site 8 out of 15 in 3c7t

Go back to Chlorine Binding Sites List in 3c7t
Chlorine binding site 8 out of 15 in the Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex with Tungstate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl4

b:38.4
occ:1.00
 O B:HOH432 3.4 40.5 1.0
CB B:ASN98 4.2 34.2 1.0
N B:ASP99 4.8 31.3 1.0
OD2 B:ASP99 4.9 31.1 1.0
CG B:ASN98 4.9 36.2 1.0

Chlorine binding site 9 out of 15 in 3c7t

Go back to Chlorine Binding Sites List in 3c7t
Chlorine binding site 9 out of 15 in the Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex with Tungstate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl13

b:22.4
occ:1.00
 O A:HOH359 2.6 33.2 1.0
O C:HOH469 3.2 37.6 1.0
CD C:PRO93 3.8 19.5 1.0
N C:VAL92 3.8 18.1 1.0
N C:TRP91 3.9 18.9 1.0
CA C:PRO90 3.9 20.2 1.0
CB C:VAL92 4.0 18.9 1.0
C C:PRO90 4.0 19.8 1.0
CG2 C:VAL92 4.1 20.5 1.0
CG2 C:VAL123 4.2 22.1 1.0
CD1 C:TRP91 4.2 19.8 1.0
CG1 C:VAL123 4.2 21.9 1.0
O C:GLY89 4.4 20.6 1.0
NE1 C:TRP91 4.4 20.9 1.0
CA C:VAL92 4.5 18.4 1.0
O A:HOH454 4.5 37.9 1.0
CB C:VAL123 4.7 20.4 1.0
CG C:PRO93 4.7 19.1 1.0
O C:HOH359 4.7 20.5 1.0
CB C:PRO90 4.8 20.1 1.0
O C:PRO90 4.8 19.0 1.0
C C:TRP91 4.8 18.1 1.0
CA C:TRP91 4.8 17.5 1.0
CG C:TRP91 4.9 18.6 1.0
N C:PRO93 4.9 19.2 1.0
O C:HOH400 4.9 34.4 1.0
CA C:VAL123 5.0 20.9 1.0

Chlorine binding site 10 out of 15 in 3c7t

Go back to Chlorine Binding Sites List in 3c7t
Chlorine binding site 10 out of 15 in the Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex with Tungstate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of the Ecdysone Phosphate Phosphatase, Eppase, From Bombix Mori in Complex with Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl8

b:24.6
occ:1.00
 O D:HOH416 2.8 26.9 1.0
O D:HOH448 2.9 30.0 1.0
N D:ILE150 3.5 19.4 1.0
CA D:SER149 3.7 20.7 1.0
CB D:SER149 3.7 21.3 1.0
CG D:LEU172 3.9 18.1 1.0
O D:ILE150 4.0 19.9 1.0
CD2 D:LEU172 4.0 18.3 1.0
CA D:ALA174 4.1 18.1 1.0
C D:SER149 4.1 20.4 1.0
O D:HOH382 4.2 23.6 1.0
O D:HOH395 4.3 30.7 1.0
CB D:ALA174 4.4 17.9 1.0
CD1 D:LEU172 4.4 20.2 1.0
CA D:ILE150 4.6 19.9 1.0
C D:ILE150 4.7 19.8 1.0
N D:ALA174 4.8 18.4 1.0
O D:LEU172 4.9 16.6 1.0
O D:VAL148 5.0 21.7 1.0
N D:SER149 5.0 20.4 1.0
N D:ASP175 5.0 20.5 1.0

Reference:

Y.Chen, J.Jakoncic, J.Wang, X.Zheng, N.Carpino, N.Nassar. Structural and Functional Characterization of the C-Terminal Domain of the Ecdysteroid Phosphate Phosphatase From Bombyx Mori Reveals A New Enzymatic Activity. Biochemistry V. 47 12135 2008.
ISSN: ISSN 0006-2960
PubMed: 18937503
DOI: 10.1021/BI801318W
Page generated: Sat Jul 20 16:55:57 2024

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