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Chlorine in PDB 3cc2: The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins

Protein crystallography data

The structure of The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins, PDB code: 3cc2 was solved by G.Gurel, G.Blaha, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.95 / 2.40
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 211.646, 299.672, 573.773, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 23.1

Other elements in 3cc2:

The structure of The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins also contains other interesting chemical elements:

Magnesium (Mg) 116 atoms
Potassium (K) 2 atoms
Cadmium (Cd) 5 atoms
Sodium (Na) 86 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 22;

Binding sites:

The binding sites of Chlorine atom in the The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins (pdb code 3cc2). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 22 binding sites of Chlorine where determined in the The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins, PDB code: 3cc2:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 22 in 3cc2

Go back to Chlorine Binding Sites List in 3cc2
Chlorine binding site 1 out of 22 in the The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Cl8503

b:38.9
occ:1.00
 O 0:HOH5389 3.3 33.1 1.0
O 0:HOH8954 3.3 24.4 1.0
N2 0:G1676 3.4 25.2 1.0
CE 2:LYS2 3.7 29.8 1.0
C1' 0:G1452 3.9 33.9 1.0
O 0:HOH3117 4.0 39.0 1.0
O 0:HOH7146 4.1 41.7 1.0
O2' 0:G1452 4.2 32.4 1.0
C2 0:A1486 4.2 30.3 1.0
N3 0:A1486 4.2 32.0 1.0
O 0:HOH4274 4.3 28.4 1.0
NZ 2:LYS2 4.4 32.1 1.0
C2 0:G1676 4.4 28.7 1.0
N3 0:G1676 4.4 28.2 1.0
O4' 0:G1452 4.5 35.2 1.0
C2' 0:G1452 4.6 31.8 1.0
CD 2:LYS2 4.6 29.0 1.0
N3 0:G1452 4.7 35.7 1.0
O2 0:C1451 4.7 37.5 1.0
N9 0:G1452 4.8 34.9 1.0
O 0:HOH6361 5.0 52.9 1.0

Chlorine binding site 2 out of 22 in 3cc2

Go back to Chlorine Binding Sites List in 3cc2
Chlorine binding site 2 out of 22 in the The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Cl8505

b:41.1
occ:1.00
 O 0:HOH4473 3.2 41.7 1.0
N2 0:G201 3.2 31.9 1.0
O 0:HOH4104 3.3 25.5 1.0
O 0:HOH9728 3.4 28.2 1.0
C5 0:C197 3.7 34.5 1.0
C1' 0:U202 3.7 41.2 1.0
C5' 0:G229 3.7 30.7 1.0
O4' 0:U202 3.9 41.4 1.0
C4' 0:G229 4.1 31.9 1.0
O3' 0:G229 4.2 31.4 1.0
C2 0:G201 4.3 33.8 1.0
O2' 0:U202 4.4 41.1 1.0
O2 0:U202 4.4 38.8 1.0
N3 0:G201 4.4 34.6 1.0
N1 0:U202 4.5 40.2 1.0
C6 0:C197 4.5 34.5 1.0
N4 0:C197 4.6 34.2 1.0
O2 0:C195 4.6 23.9 1.0
C4 0:C197 4.6 35.0 1.0
C2 0:U202 4.7 38.6 1.0
C2' 0:U202 4.7 41.8 1.0
O 0:HOH9286 4.7 33.8 1.0
C3' 0:G229 4.8 31.5 1.0
OP1 0:C230 4.8 38.0 1.0
N1 0:A199 4.9 40.6 1.0
O5' 0:G229 4.9 32.6 1.0
OP1 0:G229 4.9 31.4 1.0
C4' 0:U202 4.9 40.8 1.0

Chlorine binding site 3 out of 22 in 3cc2

Go back to Chlorine Binding Sites List in 3cc2
Chlorine binding site 3 out of 22 in the The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Cl8511

b:38.0
occ:1.00
 N Q:HIS53 3.0 31.1 1.0
O Q:HOH1479 3.2 23.6 1.0
O2' 0:C2388 3.2 25.2 1.0
CB Q:PHE52 3.6 28.4 1.0
CA Q:PHE52 3.6 30.4 1.0
C Q:PHE52 3.8 31.6 1.0
CB Q:HIS53 3.8 30.8 1.0
O4' 0:C2388 3.9 26.7 1.0
C4' 0:C2388 3.9 26.8 1.0
O 0:HOH3958 3.9 30.1 1.0
CE2 Q:PHE56 3.9 23.4 1.0
CD2 Q:PHE56 4.0 24.1 1.0
CA Q:HIS53 4.0 29.6 1.0
C1' 0:C2388 4.1 26.7 1.0
C2' 0:C2388 4.2 27.4 1.0
CG2 Q:ILE84 4.2 28.1 1.0
O 0:HOH3137 4.4 31.9 1.0
CG1 Q:ILE84 4.5 29.9 1.0
C3' 0:C2388 4.6 26.4 1.0
CB Q:ILE84 4.9 30.8 1.0
CD1 Q:ILE84 4.9 37.0 1.0
CG Q:PHE52 4.9 28.6 1.0
O3' 0:C2388 5.0 27.1 1.0
O 0:HOH9692 5.0 40.3 1.0

Chlorine binding site 4 out of 22 in 3cc2

Go back to Chlorine Binding Sites List in 3cc2
Chlorine binding site 4 out of 22 in the The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Cl8512

b:35.5
occ:1.00
 O 0:HOH4664 2.9 23.9 1.0
OG K:SER33 3.2 36.3 1.0
NZ K:LYS14 3.3 27.9 1.0
N2 0:G2582 3.4 29.5 1.0
C2 0:A2596 3.5 30.7 1.0
N3 0:A2596 3.6 31.6 1.0
O K:ILE32 3.6 37.6 1.0
O 0:HOH7157 3.7 47.7 1.0
CB K:SER33 3.8 35.0 1.0
CG K:PRO45 3.9 34.9 1.0
CD K:LYS14 3.9 28.4 1.0
CA K:SER33 4.0 34.8 1.0
CE K:LYS14 4.0 28.1 1.0
C1' 0:U2597 4.1 35.4 1.0
CB K:PRO45 4.1 33.1 1.0
O2' 0:U2597 4.4 36.3 1.0
O2 0:U2597 4.5 35.7 1.0
N3 0:A2583 4.6 28.4 1.0
C K:ILE32 4.6 36.3 1.0
N1 0:A2596 4.6 31.6 1.0
C2 0:G2582 4.7 29.4 1.0
CG K:LYS14 4.7 29.0 1.0
O4' 0:U2597 4.7 35.4 1.0
N K:SER33 4.8 34.8 1.0
C2' 0:U2597 4.9 34.9 1.0
O 0:HOH6920 4.9 0.4 1.0
N1 0:U2597 4.9 35.2 1.0
C1' 0:A2583 4.9 27.3 1.0
N K:VAL34 4.9 34.2 1.0
C4 0:A2596 5.0 32.8 1.0

Chlorine binding site 5 out of 22 in 3cc2

Go back to Chlorine Binding Sites List in 3cc2
Chlorine binding site 5 out of 22 in the The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Cl8513

b:44.6
occ:1.00
 O 0:HOH4223 2.9 0.8 1.0
N2 0:G1329 3.1 22.6 1.0
N1 0:G1329 3.2 22.4 1.0
O 0:HOH4515 3.2 51.2 1.0
N2 0:G1299 3.5 23.6 1.0
O 0:HOH3190 3.5 19.8 1.0
N6 0:A1328 3.5 22.1 1.0
C2 0:G1329 3.6 23.2 1.0
O2' 0:G1300 3.7 27.9 1.0
C1' 0:G1300 3.9 28.9 1.0
O Y:HOH8533 4.0 27.4 1.0
O4' 0:G1300 4.1 30.3 1.0
C6 0:G1329 4.3 23.9 1.0
N1 0:A1330 4.4 20.1 1.0
N3 0:G1299 4.4 26.8 1.0
C2 0:G1299 4.4 26.5 1.0
O6 0:G1329 4.5 29.4 1.0
C2' 0:G1300 4.5 29.4 1.0
C2 0:A1330 4.7 19.5 1.0
C4' 0:G1300 4.7 29.4 1.0
C6 0:A1328 4.8 22.1 1.0
O 0:HOH4396 4.9 45.6 1.0
N3 0:G1329 4.9 23.3 1.0

Chlorine binding site 6 out of 22 in 3cc2

Go back to Chlorine Binding Sites List in 3cc2
Chlorine binding site 6 out of 22 in the The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Cl8514

b:39.5
occ:1.00
 O L:HOH8582 2.8 41.9 1.0
ND1 L:HIS13 3.0 15.5 1.0
O2' 0:G644 3.0 24.8 1.0
C2' 0:G644 3.5 21.5 1.0
N9 0:G644 3.6 17.8 1.0
C4 0:G644 3.7 14.0 1.0
C8 0:G644 3.9 16.5 1.0
CE1 L:HIS13 3.9 14.8 1.0
CG L:GLN7 3.9 25.7 1.0
C1' 0:G644 4.0 19.0 1.0
CG L:HIS13 4.0 17.1 1.0
C5 0:G644 4.1 15.8 1.0
CB L:HIS13 4.1 17.7 1.0
N3 0:G644 4.2 15.1 1.0
CG L:LYS4 4.2 33.4 1.0
N7 0:G644 4.2 18.3 1.0
CB L:GLN7 4.6 22.4 1.0
C2 0:G644 4.9 15.6 1.0
CE L:LYS4 4.9 41.2 1.0
C6 0:G644 4.9 17.4 1.0
O L:HIS13 4.9 19.7 1.0
O 0:HOH9727 4.9 33.0 1.0
CA L:LYS4 5.0 25.1 1.0
CD L:GLN7 5.0 30.1 1.0
O 0:HOH6663 5.0 52.7 1.0

Chlorine binding site 7 out of 22 in 3cc2

Go back to Chlorine Binding Sites List in 3cc2
Chlorine binding site 7 out of 22 in the The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Cl8515

b:53.3
occ:1.00
 N2 0:G1646 3.2 43.4 1.0
N6 0:A1598 3.3 34.5 1.0
N6 0:A1597 3.5 34.3 1.0
O 0:HOH6356 3.7 60.4 1.0
O4' 0:G1647 4.0 40.5 1.0
C1' 0:G1647 4.0 38.9 1.0
N7 0:A1597 4.1 33.8 1.0
C1' 0:G1540 4.2 43.3 1.0
C2 0:G1646 4.2 44.2 1.0
C6 0:A1598 4.3 35.5 1.0
N3 0:G1646 4.4 44.6 1.0
N3 0:G1540 4.5 43.2 1.0
C6 0:A1597 4.5 35.3 1.0
O4' 0:G1540 4.7 42.3 1.0
C5 0:A1597 4.7 34.7 1.0
N9 0:G1647 4.8 40.3 1.0
N9 0:G1540 4.8 44.0 1.0
O2' 0:U1596 4.8 39.4 1.0
C4 0:G1540 4.9 43.9 1.0
O2' 0:G1540 4.9 46.4 1.0
C5 0:A1598 5.0 35.4 1.0
O2' 0:G1647 5.0 38.1 1.0

Chlorine binding site 8 out of 22 in 3cc2

Go back to Chlorine Binding Sites List in 3cc2
Chlorine binding site 8 out of 22 in the The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Cl8516

b:41.3
occ:1.00
 O2' 0:G1119 3.0 29.9 1.0
N4 0:C1243 3.2 28.8 1.0
NZ J:LYS56 3.3 34.1 1.0
C8 0:G1119 3.4 24.7 1.0
CD J:LYS56 3.7 33.8 1.0
C2' 0:G1119 3.8 29.4 1.0
NE2 J:GLN52 3.9 42.0 1.0
N7 0:G1119 3.9 25.6 1.0
CE J:LYS56 4.1 32.9 1.0
N9 0:G1119 4.1 26.2 1.0
OE1 J:GLN52 4.2 42.8 1.0
C4 0:C1243 4.3 30.6 1.0
C1' 0:G1119 4.4 29.0 1.0
O 0:HOH6505 4.4 74.7 1.0
CD J:GLN52 4.5 41.9 1.0
N6 0:A1242 4.6 28.1 1.0
C5 0:C1243 4.6 29.4 1.0
O6 0:G1121 4.9 28.1 1.0
C5 0:G1119 4.9 24.2 1.0
NA 0:NA8302 5.0 44.1 1.0
C4 0:G1119 5.0 23.2 1.0

Chlorine binding site 9 out of 22 in 3cc2

Go back to Chlorine Binding Sites List in 3cc2
Chlorine binding site 9 out of 22 in the The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Cl8517

b:47.9
occ:1.00
 O2' 0:C594 2.8 37.2 1.0
O Y:HOH8554 2.8 75.3 1.0
O Y:HOH8594 3.3 39.7 1.0
O Y:HOH8535 3.3 28.2 1.0
O4' 0:U595 3.5 42.7 1.0
C2' 0:C594 3.7 41.0 1.0
CG Y:ARG115 3.7 37.5 1.0
C4' 0:U595 3.8 42.0 1.0
C5' 0:U595 3.8 39.6 1.0
NH2 Y:ARG122 3.9 41.1 1.0
NE Y:ARG115 4.0 41.9 1.0
CD Y:ARG115 4.0 39.4 1.0
O 0:HOH6102 4.3 43.6 1.0
O2 0:C594 4.3 44.4 1.0
O 0:HOH5851 4.4 77.1 1.0
C1' 0:C594 4.5 42.1 1.0
C1' 0:U595 4.7 43.8 1.0
O5' 0:U595 4.9 38.9 1.0
CZ Y:ARG122 4.9 39.8 1.0
CZ Y:ARG115 4.9 42.0 1.0
C3' 0:C594 5.0 38.9 1.0

Chlorine binding site 10 out of 22 in 3cc2

Go back to Chlorine Binding Sites List in 3cc2
Chlorine binding site 10 out of 22 in the The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with Rrna Sequence For the 23S Rrna and Genome-Derived Sequences For R-Proteins within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Cl8522

b:44.3
occ:1.00
 N1 0:G1072 2.9 23.6 1.0
O 0:HOH4904 3.2 56.8 1.0
N2 0:G1072 3.4 23.0 1.0
C8 0:G1087 3.5 26.3 1.0
O2' 0:G1087 3.5 29.9 1.0
N7 0:A1291 3.5 27.5 1.0
C2 0:G1072 3.6 23.8 1.0
N7 0:G1087 3.8 27.1 1.0
C6 0:G1072 3.8 23.5 1.0
O6 0:G1072 3.8 22.2 1.0
C5 0:A1291 3.9 27.9 1.0
N9 0:G1087 4.0 26.2 1.0
O 0:HOH8669 4.1 44.0 1.0
C2' 0:G1087 4.1 28.6 1.0
N6 0:A1291 4.1 27.6 1.0
C8 0:A1291 4.1 26.8 1.0
C6 0:A1291 4.2 28.6 1.0
C5 0:G1087 4.5 26.4 1.0
C1' 0:G1087 4.6 27.9 1.0
C4 0:A1291 4.6 27.2 1.0
C4 0:G1087 4.7 26.0 1.0
OE2 W:GLU10 4.7 39.1 1.0
O 0:HOH3584 4.8 63.4 1.0
N9 0:A1291 4.8 27.8 1.0
N3 0:G1072 4.9 24.4 1.0

Reference:

G.Blaha, G.Gurel, S.J.Schroeder, P.B.Moore, T.A.Steitz. Mutations Outside the Anisomycin-Binding Site Can Make Ribosomes Drug-Resistant. J.Mol.Biol. V. 379 505 2008.
ISSN: ISSN 0022-2836
PubMed: 18455733
DOI: 10.1016/J.JMB.2008.03.075
Page generated: Fri Jul 11 03:43:01 2025

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