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Chlorine in PDB 3cfp: Structure of the Replicating Complex of A Pol Alpha Family Dna Polymerase, Ternary Complex 1

Enzymatic activity of Structure of the Replicating Complex of A Pol Alpha Family Dna Polymerase, Ternary Complex 1

All present enzymatic activity of Structure of the Replicating Complex of A Pol Alpha Family Dna Polymerase, Ternary Complex 1:
2.7.7.7;

Protein crystallography data

The structure of Structure of the Replicating Complex of A Pol Alpha Family Dna Polymerase, Ternary Complex 1, PDB code: 3cfp was solved by J.Wang, D.Klimenko, M.Wang, T.A.Steitz, W.H.Konigsberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 80.726, 117.281, 126.813, 90.00, 90.00, 90.00
R / Rfree (%) 19.7 / 26.7

Other elements in 3cfp:

The structure of Structure of the Replicating Complex of A Pol Alpha Family Dna Polymerase, Ternary Complex 1 also contains other interesting chemical elements:

Calcium (Ca) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of the Replicating Complex of A Pol Alpha Family Dna Polymerase, Ternary Complex 1 (pdb code 3cfp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structure of the Replicating Complex of A Pol Alpha Family Dna Polymerase, Ternary Complex 1, PDB code: 3cfp:

Chlorine binding site 1 out of 1 in 3cfp

Go back to Chlorine Binding Sites List in 3cfp
Chlorine binding site 1 out of 1 in the Structure of the Replicating Complex of A Pol Alpha Family Dna Polymerase, Ternary Complex 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the Replicating Complex of A Pol Alpha Family Dna Polymerase, Ternary Complex 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1005

b:0.2
occ:1.00
 O A:HOH1061 2.5 54.3 1.0
OD1 A:ASN232 2.6 47.8 1.0
OD1 A:ASN228 3.0 48.5 1.0
O A:ASN228 3.1 49.0 1.0
CG A:ASN232 3.1 49.1 1.0
ND2 A:ASN232 3.5 48.7 1.0
CD A:LYS231 3.5 55.9 1.0
CB A:LYS231 3.6 54.3 1.0
CB A:ASN228 3.6 46.6 1.0
CG A:LYS231 3.6 54.9 1.0
CA A:ASN228 3.6 47.1 1.0
CG A:ASN228 3.7 46.7 1.0
C A:ASN228 3.7 49.0 1.0
NZ A:LYS231 3.8 59.5 1.0
N A:ASN232 3.8 52.2 1.0
CB A:ASN232 4.2 50.4 1.0
CE A:LYS231 4.2 58.6 1.0
C A:LYS231 4.3 52.4 1.0
CA A:ASN232 4.3 51.2 1.0
CA A:LYS231 4.5 53.0 1.0
O A:SER127 4.6 60.0 1.0
O A:HOH1038 4.7 62.0 1.0
O A:LYS231 5.0 52.7 1.0
N A:ARG229 5.0 48.5 1.0
ND2 A:ASN228 5.0 46.2 1.0

Reference:

D.Klimenko, M.Wang, T.A.Steitz, W.H.Konigsberg, J.Wang. Insights Into Base Selectivity From the Structures of An RB69 Dna Polymerase Triple Mutant To Be Published.
Page generated: Sat Jul 20 17:29:37 2024

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