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Chlorine in PDB 3cnx: Crystal Structure of A Putative Dehydratase From the NTF2-Like Family (SAV_4671) From Streptomyces Avermitilis at 2.10 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Dehydratase From the NTF2-Like Family (SAV_4671) From Streptomyces Avermitilis at 2.10 A Resolution, PDB code: 3cnx was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.55 / 2.10
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 103.000, 128.750, 44.380, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 23.5

Other elements in 3cnx:

The structure of Crystal Structure of A Putative Dehydratase From the NTF2-Like Family (SAV_4671) From Streptomyces Avermitilis at 2.10 A Resolution also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Putative Dehydratase From the NTF2-Like Family (SAV_4671) From Streptomyces Avermitilis at 2.10 A Resolution (pdb code 3cnx). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of A Putative Dehydratase From the NTF2-Like Family (SAV_4671) From Streptomyces Avermitilis at 2.10 A Resolution, PDB code: 3cnx:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 3cnx

Go back to Chlorine Binding Sites List in 3cnx
Chlorine binding site 1 out of 3 in the Crystal Structure of A Putative Dehydratase From the NTF2-Like Family (SAV_4671) From Streptomyces Avermitilis at 2.10 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Putative Dehydratase From the NTF2-Like Family (SAV_4671) From Streptomyces Avermitilis at 2.10 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl170

b:69.9
occ:1.00
NH1 A:ARG139 3.2 46.2 1.0
NH1 B:ARG139 3.3 45.5 1.0
NH2 A:ARG139 3.4 45.7 1.0
OG1 B:THR102 3.4 36.4 1.0
OG1 A:THR102 3.5 36.0 1.0
N B:ASP101 3.6 37.1 1.0
CZ A:ARG139 3.6 45.8 1.0
N A:ASP101 3.9 37.1 1.0
NH2 B:ARG139 4.0 45.4 1.0
CZ B:ARG139 4.0 44.8 1.0
CB B:ASP101 4.0 36.9 1.0
N B:THR102 4.1 36.5 1.0
O B:THR99 4.1 39.6 1.0
CA B:ASP101 4.2 36.9 1.0
CB A:ASP101 4.2 36.9 1.0
N A:THR102 4.3 36.8 1.0
C B:ASP101 4.3 36.7 1.0
C A:ASP101 4.4 36.5 1.0
CA A:ASP101 4.4 37.1 1.0
CB A:THR102 4.5 36.2 1.0
CB B:THR102 4.5 36.3 1.0
O A:THR99 4.5 39.1 1.0
OD2 B:ASP101 4.6 41.4 1.0
CG B:ASP101 4.6 38.6 1.0
C B:GLY100 4.7 37.9 1.0
CA B:GLY100 4.8 38.2 1.0
NE A:ARG139 4.8 44.9 1.0
CA B:THR102 4.9 36.3 1.0
O A:ASP101 4.9 36.5 1.0
C A:GLY100 4.9 37.8 1.0

Chlorine binding site 2 out of 3 in 3cnx

Go back to Chlorine Binding Sites List in 3cnx
Chlorine binding site 2 out of 3 in the Crystal Structure of A Putative Dehydratase From the NTF2-Like Family (SAV_4671) From Streptomyces Avermitilis at 2.10 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Putative Dehydratase From the NTF2-Like Family (SAV_4671) From Streptomyces Avermitilis at 2.10 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl171

b:80.8
occ:1.00
O B:LEU131 3.2 38.3 1.0
N B:LEU131 3.5 40.2 1.0
O B:HOH223 3.6 36.1 1.0
C B:LEU131 4.0 38.0 1.0
CB B:PRO154 4.1 34.4 1.0
O B:VAL155 4.1 40.3 1.0
CA B:GLN130 4.2 42.1 1.0
CA B:LEU131 4.2 38.2 1.0
CB B:GLN130 4.2 42.4 1.0
C B:GLN130 4.4 41.1 1.0
CA B:PRO154 4.5 35.5 1.0
CB B:LEU131 4.5 38.0 1.0
N B:VAL155 4.5 37.6 1.0
CG B:GLN130 4.7 45.2 1.0
C B:VAL155 5.0 40.7 1.0
CG2 B:VAL132 5.0 33.9 1.0
C B:PRO154 5.0 36.1 1.0

Chlorine binding site 3 out of 3 in 3cnx

Go back to Chlorine Binding Sites List in 3cnx
Chlorine binding site 3 out of 3 in the Crystal Structure of A Putative Dehydratase From the NTF2-Like Family (SAV_4671) From Streptomyces Avermitilis at 2.10 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Putative Dehydratase From the NTF2-Like Family (SAV_4671) From Streptomyces Avermitilis at 2.10 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl171

b:47.2
occ:0.50
N C:ASP101 3.4 37.8 1.0
OG1 C:THR102 3.5 35.4 1.0
NH1 C:ARG139 3.9 48.1 1.0
O C:THR99 3.9 40.3 1.0
N C:THR102 4.0 36.2 1.0
NH2 C:ARG139 4.1 44.4 1.0
CA C:ASP101 4.1 37.1 1.0
CB C:ASP101 4.2 37.6 1.0
C C:ASP101 4.2 36.8 1.0
CZ C:ARG139 4.3 46.1 1.0
CA C:GLY100 4.3 38.6 1.0
C C:GLY100 4.3 38.2 1.0
CB C:THR102 4.4 35.8 1.0
OD2 C:ASP101 4.7 40.9 1.0
CG C:ASP101 4.8 38.2 1.0
CA C:THR102 4.9 35.5 1.0
C C:THR99 4.9 40.0 1.0
O C:ASP101 5.0 36.8 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Fri Jul 11 04:10:21 2025

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