Atomistry » Chlorine » PDB 3ct9-3d44 » 3d0g
Atomistry »
  Chlorine »
    PDB 3ct9-3d44 »
      3d0g »

Chlorine in PDB 3d0g: Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2

Enzymatic activity of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2

All present enzymatic activity of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2:
3.4.17.23;

Protein crystallography data

The structure of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2, PDB code: 3d0g was solved by F.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.14 / 2.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 80.008, 119.762, 108.801, 90.00, 96.22, 90.00
R / Rfree (%) 21.4 / 27.9

Other elements in 3d0g:

The structure of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2 also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2 (pdb code 3d0g). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2, PDB code: 3d0g:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3d0g

Go back to Chlorine Binding Sites List in 3d0g
Chlorine binding site 1 out of 2 in the Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl902

b:66.8
occ:1.00
 NE A:ARG169 3.2 59.4 1.0
NH1 A:ARG169 3.5 58.0 1.0
CB A:ASP499 3.5 60.6 1.0
NE1 A:TRP477 3.6 58.5 1.0
NZ A:LYS481 3.7 62.4 1.0
CZ A:ARG169 3.8 58.5 1.0
CZ2 A:TRP478 3.9 62.3 1.0
O A:ASP499 4.0 59.5 1.0
CH2 A:TRP478 4.1 62.7 1.0
CZ2 A:TRP477 4.1 58.4 1.0
C A:ASP499 4.2 59.4 1.0
CE2 A:TRP477 4.2 58.3 1.0
CD A:ARG169 4.2 61.1 1.0
CG A:ASP499 4.3 60.3 1.0
CA A:ASP499 4.4 60.5 1.0
CZ2 A:TRP165 4.4 48.3 1.0
OD1 A:ASP499 4.7 60.2 1.0
CD1 A:TRP477 4.7 58.9 1.0
N A:PRO500 4.8 58.4 1.0
CE2 A:TRP478 4.8 62.4 1.0
OD2 A:ASP499 4.9 59.6 1.0
CD1 A:TRP271 4.9 50.4 1.0
OG A:SER502 5.0 50.1 1.0

Chlorine binding site 2 out of 2 in 3d0g

Go back to Chlorine Binding Sites List in 3d0g
Chlorine binding site 2 out of 2 in the Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl902

b:53.9
occ:1.00
 NH1 B:ARG169 3.2 56.7 1.0
NE B:ARG169 3.2 58.3 1.0
CB B:ASP499 3.4 62.3 1.0
NE1 B:TRP477 3.5 51.9 1.0
CZ B:ARG169 3.7 56.6 1.0
CZ2 B:TRP478 3.7 55.8 1.0
CH2 B:TRP478 3.9 56.1 1.0
CG B:ASP499 4.2 62.4 1.0
O B:ASP499 4.2 62.3 1.0
C B:ASP499 4.3 62.3 1.0
CE2 B:TRP477 4.3 51.2 1.0
CZ2 B:TRP165 4.3 49.0 1.0
CA B:ASP499 4.4 62.4 1.0
CZ2 B:TRP477 4.4 51.0 1.0
CD B:ARG169 4.4 60.2 1.0
CD1 B:TRP477 4.5 51.8 1.0
OD1 B:ASP499 4.6 62.4 1.0
CE B:LYS481 4.7 59.9 1.0
CE2 B:TRP478 4.7 56.4 1.0
N B:PRO500 4.9 62.2 1.0
CD1 B:TRP271 4.9 50.2 1.0
NH2 B:ARG169 5.0 56.1 1.0
OD2 B:ASP499 5.0 62.0 1.0
CZ3 B:TRP478 5.0 56.3 1.0

Reference:

F.Li, F.Li. N/A N/A.
ISSN: ISSN 0022-538X
PubMed: 18448527
DOI: 10.1128/JVI.00442-08
Page generated: Fri Jul 11 04:18:41 2025

Last articles

Fe in 8DSG
Fe in 8DNP
Fe in 8DRM
Fe in 8DRL
Fe in 8DRJ
Fe in 8DRF
Fe in 8DRD
Fe in 8DOV
Fe in 8DOJ
Fe in 8DOI
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy