Chlorine in PDB 3d0h: Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2

Enzymatic activity of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2

All present enzymatic activity of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2:
3.4.17.23;

Protein crystallography data

The structure of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2, PDB code: 3d0h was solved by F.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	37.50 / 3.10
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	80.352, 119.841, 109.420, 90.00, 95.89, 90.00
*R / R_free (%)*	22.1 / 30.2

Other elements in 3d0h:

The structure of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2 also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2 (pdb code 3d0h). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2, PDB code: 3d0h:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3d0h

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Chlorine Binding Sites List in 3d0h

Chlorine binding site 1 out of 2 in the Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl902 b:78.5 occ:1.00	NE1	A:TRP477	3.2	47.5	1.0
	NE	A:ARG169	3.3	69.9	1.0
	CB	A:ASP499	3.5	70.9	1.0
	NH1	A:ARG169	3.5	67.5	1.0
	NZ	A:LYS481	3.7	63.3	1.0
	CZ	A:ARG169	3.9	68.3	1.0
	CE2	A:TRP477	4.1	47.7	1.0
	CZ2	A:TRP478	4.1	56.6	1.0
	CD1	A:TRP477	4.1	48.5	1.0
	CH2	A:TRP478	4.2	56.5	1.0
	CZ2	A:TRP477	4.3	49.2	1.0
	C	A:ASP499	4.3	68.4	1.0
	CE	A:LYS481	4.3	64.6	1.0
	CG	A:ASP499	4.4	70.5	1.0
	O	A:ASP499	4.4	68.3	1.0
	CD	A:ARG169	4.4	71.4	1.0
	CA	A:ASP499	4.4	70.5	1.0
	OD1	A:ASP499	4.7	69.6	1.0
	CZ2	A:TRP165	4.7	55.4	1.0
	N	A:PRO500	4.8	66.1	1.0
	CD1	A:TRP271	4.9	54.9	1.0

Chlorine binding site 2 out of 2 in 3d0h

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Chlorine Binding Sites List in 3d0h

Chlorine binding site 2 out of 2 in the Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Civet Strain Complexed with Human-Civet Chimeric Receptor ACE2 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Cl902 b:52.6 occ:1.00	NE	B:ARG169	3.3	68.0	1.0
	NH1	B:ARG169	3.5	68.1	1.0
	CB	B:ASP499	3.5	56.6	1.0
	CZ2	B:TRP477	3.7	47.1	1.0
	NE1	B:TRP477	3.8	47.4	1.0
	CZ	B:ARG169	3.9	67.5	1.0
	O	B:ASP499	4.0	55.8	1.0
	CH2	B:TRP478	4.1	62.6	1.0
	CE2	B:TRP477	4.1	46.5	1.0
	CZ2	B:TRP478	4.2	62.4	1.0
	C	B:ASP499	4.2	55.8	1.0
	CA	B:ASP499	4.4	56.4	1.0
	CD	B:ARG169	4.4	68.1	1.0
	CG	B:ASP499	4.4	57.1	1.0
	OD1	B:ASP499	4.6	56.6	1.0
	CE	B:LYS481	4.6	47.5	1.0
	CZ2	B:TRP165	4.7	55.5	1.0
	N	B:PRO500	4.8	55.1	1.0
	CD1	B:TRP271	4.8	53.9	1.0
	CH2	B:TRP477	4.9	47.5	1.0
	CZ3	B:TRP478	5.0	63.1	1.0

Reference:

F.Li, F.Li. N/A N/A.
ISSN: ISSN 0022-538X
PubMed: 18448527
DOI: 10.1128/JVI.00442-08

Page generated: Fri Jul 11 04:19:03 2025

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