Chlorine in PDB 3dn0: Pentafluorobenzene Binding in the Hydrophobic Cavity of T4 Lysozyme L99A Mutant

Enzymatic activity of Pentafluorobenzene Binding in the Hydrophobic Cavity of T4 Lysozyme L99A Mutant

All present enzymatic activity of Pentafluorobenzene Binding in the Hydrophobic Cavity of T4 Lysozyme L99A Mutant:
3.2.1.17;

Protein crystallography data

The structure of Pentafluorobenzene Binding in the Hydrophobic Cavity of T4 Lysozyme L99A Mutant, PDB code: 3dn0 was solved by L.Liu, B.W.Matthews, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	45.41 / 1.80
*Space group*	P 3₂ 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	59.756, 59.756, 94.856, 90.00, 90.00, 120.00
*R / R_free (%)*	19.3 / 22.2

Other elements in 3dn0:

The structure of Pentafluorobenzene Binding in the Hydrophobic Cavity of T4 Lysozyme L99A Mutant also contains other interesting chemical elements:

Fluorine

(F)

10 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Pentafluorobenzene Binding in the Hydrophobic Cavity of T4 Lysozyme L99A Mutant (pdb code 3dn0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Pentafluorobenzene Binding in the Hydrophobic Cavity of T4 Lysozyme L99A Mutant, PDB code: 3dn0:

Chlorine binding site 1 out of 1 in 3dn0

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Chlorine Binding Sites List in 3dn0

Chlorine binding site 1 out of 1 in the Pentafluorobenzene Binding in the Hydrophobic Cavity of T4 Lysozyme L99A Mutant

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Pentafluorobenzene Binding in the Hydrophobic Cavity of T4 Lysozyme L99A Mutant within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl903 b:56.9 occ:1.00	CE	A:LYS16	3.4	19.1	0.5
	CA	A:GLY56	3.9	20.3	1.0
	CG	A:LYS16	4.0	16.7	0.5
	CE	A:LYS43	4.1	24.3	1.0
	O	A:GLY56	4.2	19.3	1.0
	CD	A:LYS16	4.3	17.3	0.5
	CB	A:ILE17	4.4	16.1	1.0
	C	A:GLY56	4.4	19.7	1.0
	NZ	A:LYS16	4.5	20.4	0.5
	O	A:ASN55	4.6	22.3	1.0
	CD1	A:ILE17	4.7	16.0	1.0
	NZ	A:LYS43	4.7	26.2	1.0
	N	A:ILE17	4.7	16.1	1.0
	CG1	A:ILE17	4.8	15.6	1.0
	CD1	A:LEU39	4.8	21.6	1.0
	N	A:GLY56	4.9	21.4	1.0
	O	A:ILE17	5.0	15.7	1.0

Reference:

L.Liu, W.A.Baase, B.W.Matthews. Halogenated Benzenes Bound Within A Non-Polar Cavity in T4 Lysozyme Provide Examples of I...S and I...Se Halogen-Bonding. J.Mol.Biol. V. 385 595 2009.
ISSN: ISSN 0022-2836
PubMed: 19014950
DOI: 10.1016/J.JMB.2008.10.086

Page generated: Fri Jul 11 04:33:27 2025

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