Chlorine in PDB 3dvv: Crystal Structure of Hiv-1 Subtype F Dis Extended Duplex Rna Bound to Ribostamycin (U267OME)

The structure of Crystal Structure of Hiv-1 Subtype F Dis Extended Duplex Rna Bound to Ribostamycin (U267OME), PDB code: 3dvv was solved by E.Ennifar, P.Dumas, V.Olieric, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	18.59 / 2.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	99.703, 30.489, 58.004, 90.00, 122.25, 90.00
R / Rfree (%)	26.8 / 27.7

The structure of Crystal Structure of Hiv-1 Subtype F Dis Extended Duplex Rna Bound to Ribostamycin (U267OME) also contains other interesting chemical elements:

Potassium

(K)

4 atoms

The binding sites of Chlorine atom in the Crystal Structure of Hiv-1 Subtype F Dis Extended Duplex Rna Bound to Ribostamycin (U267OME) (pdb code 3dvv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Hiv-1 Subtype F Dis Extended Duplex Rna Bound to Ribostamycin (U267OME), PDB code: 3dvv:

Chlorine binding site 1 out of 1 in the Crystal Structure of Hiv-1 Subtype F Dis Extended Duplex Rna Bound to Ribostamycin (U267OME)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Hiv-1 Subtype F Dis Extended Duplex Rna Bound to Ribostamycin (U267OME) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl26 b:42.2 occ:0.50 N4 A:C17 2.8 40.5 1.0 C5 A:C17 3.4 43.6 1.0 C4 A:C17 3.5 43.3 1.0 N6 A:A18 4.2 34.6 1.0 N7 A:A16 4.2 43.6 1.0 C6 A:C17 4.6 45.2 1.0 O A:HOH46 4.7 48.8 1.0 C8 A:A16 4.7 42.8 1.0 N3 A:C17 4.8 41.9 1.0 C5 A:A16 5.0 42.2 1.0

V.Olieric, U.Rieder, K.Lang, A.Serganov, C.Schulze-Brise, R.Micura, P.Dumas, E.Ennifar. A Fast Strategy For Selenium Derivatization and Phasing of Rna Structures To Be Published.