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Chlorine in PDB 3dyi: Snapshots of Esterase D From Lactobacillus Rhamnosus: Insights Into A Rotation Driven Catalytic Mechanism

Protein crystallography data

The structure of Snapshots of Esterase D From Lactobacillus Rhamnosus: Insights Into A Rotation Driven Catalytic Mechanism, PDB code: 3dyi was solved by M.D.Bennett, M.-L.Delabre, R.Holland, G.E.Norris, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.54 / 1.72
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 47.442, 47.442, 174.180, 90.00, 90.00, 120.00
R / Rfree (%) 17.7 / 20.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Snapshots of Esterase D From Lactobacillus Rhamnosus: Insights Into A Rotation Driven Catalytic Mechanism (pdb code 3dyi). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Snapshots of Esterase D From Lactobacillus Rhamnosus: Insights Into A Rotation Driven Catalytic Mechanism, PDB code: 3dyi:

Chlorine binding site 1 out of 1 in 3dyi

Go back to Chlorine Binding Sites List in 3dyi
Chlorine binding site 1 out of 1 in the Snapshots of Esterase D From Lactobacillus Rhamnosus: Insights Into A Rotation Driven Catalytic Mechanism


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Snapshots of Esterase D From Lactobacillus Rhamnosus: Insights Into A Rotation Driven Catalytic Mechanism within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl245

b:33.8
occ:1.00
O A:HOH344 2.9 32.8 1.0
OG A:SER94 2.9 22.1 1.0
O A:HOH434 3.1 31.9 1.0
O A:HOH419 3.1 40.8 1.0
N A:TYR24 3.2 20.5 1.0
N A:LEU95 3.2 20.2 1.0
CB A:SER94 3.2 21.2 1.0
CB A:TYR24 3.3 21.2 1.0
CB A:LEU95 3.6 20.0 1.0
CA A:TYR24 3.8 20.9 1.0
CA A:LEU95 4.0 20.5 1.0
CB A:ALA23 4.0 19.8 1.0
O A:TYR24 4.1 20.9 1.0
C A:ALA23 4.2 20.2 1.0
C A:SER94 4.2 20.6 1.0
CA A:ALA23 4.2 20.1 1.0
CA A:SER94 4.3 20.7 1.0
CD2 A:LEU127 4.4 31.7 1.0
O A:HOH359 4.4 34.8 1.0
C A:TYR24 4.5 21.0 1.0
CG A:TYR24 4.5 21.7 1.0
CD1 A:LEU190 4.9 29.3 1.0
CD2 A:TYR24 4.9 22.4 1.0
NE2 A:HIS219 4.9 22.4 1.0
O A:LEU93 5.0 20.5 1.0

Reference:

M.D.Bennett, M.-L.Delabre, R.Holland, G.E.Norris. Snapshots of Esterase D From Lactobacillus Rhamnosus: Insights Into A Rotation Driven Catalytic Mechanism To Be Published.
Page generated: Fri Jul 11 04:39:43 2025

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