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Chlorine in PDB 3fdd: The Crystal Structure of the Pseudomonas Dacunhae Aspartate-Beta- Decarboxylase Reveals A Novel Oligomeric Assembly For A Pyridoxal-5- Phosphate Dependent Enzyme

Enzymatic activity of The Crystal Structure of the Pseudomonas Dacunhae Aspartate-Beta- Decarboxylase Reveals A Novel Oligomeric Assembly For A Pyridoxal-5- Phosphate Dependent Enzyme

All present enzymatic activity of The Crystal Structure of the Pseudomonas Dacunhae Aspartate-Beta- Decarboxylase Reveals A Novel Oligomeric Assembly For A Pyridoxal-5- Phosphate Dependent Enzyme:
4.1.1.12;

Protein crystallography data

The structure of The Crystal Structure of the Pseudomonas Dacunhae Aspartate-Beta- Decarboxylase Reveals A Novel Oligomeric Assembly For A Pyridoxal-5- Phosphate Dependent Enzyme, PDB code: 3fdd was solved by S.Lima, B.Sundararaju, C.Huang, R.Khristoforov, C.Momany, R.S.Phillips, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 106.60 / 2.35
Space group I 2 3
Cell size a, b, c (Å), α, β, γ (°) 150.453, 150.453, 150.453, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 21.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Crystal Structure of the Pseudomonas Dacunhae Aspartate-Beta- Decarboxylase Reveals A Novel Oligomeric Assembly For A Pyridoxal-5- Phosphate Dependent Enzyme (pdb code 3fdd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the The Crystal Structure of the Pseudomonas Dacunhae Aspartate-Beta- Decarboxylase Reveals A Novel Oligomeric Assembly For A Pyridoxal-5- Phosphate Dependent Enzyme, PDB code: 3fdd:

Chlorine binding site 1 out of 1 in 3fdd

Go back to Chlorine Binding Sites List in 3fdd
Chlorine binding site 1 out of 1 in the The Crystal Structure of the Pseudomonas Dacunhae Aspartate-Beta- Decarboxylase Reveals A Novel Oligomeric Assembly For A Pyridoxal-5- Phosphate Dependent Enzyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Crystal Structure of the Pseudomonas Dacunhae Aspartate-Beta- Decarboxylase Reveals A Novel Oligomeric Assembly For A Pyridoxal-5- Phosphate Dependent Enzyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl536

b:32.9
occ:1.00
 NE A:ARG53 3.1 26.7 1.0
N A:GLY99 3.2 32.7 1.0
NH1 A:ARG49 3.4 24.7 1.0
CG A:ARG53 3.7 19.9 1.0
N A:GLU98 3.7 35.4 1.0
CD A:ARG49 3.8 23.6 1.0
NH2 A:ARG53 3.8 22.3 1.0
CB A:ARG49 3.8 23.1 1.0
CA A:GLY99 3.8 31.6 1.0
O A:HOH599 3.9 45.2 1.0
CZ A:ARG53 3.9 26.4 1.0
CD A:ARG53 4.0 21.6 1.0
CB A:GLN97 4.0 36.4 1.0
CG A:ARG49 4.1 23.2 1.0
C A:GLN97 4.1 35.6 1.0
C A:GLU98 4.2 34.2 1.0
CA A:GLN97 4.3 36.4 1.0
CA A:GLU98 4.3 35.8 1.0
CZ A:ARG49 4.4 23.2 1.0
CB A:GLU98 4.5 35.8 1.0
NE A:ARG49 4.5 20.5 1.0
O A:ARG49 4.5 23.4 1.0
CG A:GLN97 4.7 35.5 1.0
N A:VAL100 4.7 30.6 1.0
CA A:ARG49 4.7 23.1 1.0
C A:ARG49 4.8 22.6 1.0
C A:GLY99 4.8 31.0 1.0
O A:GLN97 4.8 34.7 1.0

Reference:

S.Lima, B.Sundararaju, C.Huang, R.Khristoforov, C.Momany, R.S.Phillips. The Crystal Structure of the Pseudomonas Dacunhae Aspartate-Beta-Decarboxylase Dodecamer Reveals An Unknown Oligomeric Assembly For A Pyridoxal-5'-Phosphate-Dependent Enzyme. J.Mol.Biol. V. 388 98 2009.
ISSN: ISSN 0022-2836
PubMed: 19265705
DOI: 10.1016/J.JMB.2009.02.055
Page generated: Fri Jul 11 05:04:56 2025

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