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Chlorine in PDB 3fdi: Crystal Structure of Uncharacterized Protein From Eubacterium Ventriosum Atcc 27560.

Protein crystallography data

The structure of Crystal Structure of Uncharacterized Protein From Eubacterium Ventriosum Atcc 27560., PDB code: 3fdi was solved by B.Nocek, L.Keigher, R.Jedrzejczak, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 2.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 84.613, 114.932, 59.530, 90.00, 128.06, 90.00
R / Rfree (%) 19.8 / 24.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Uncharacterized Protein From Eubacterium Ventriosum Atcc 27560. (pdb code 3fdi). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Uncharacterized Protein From Eubacterium Ventriosum Atcc 27560., PDB code: 3fdi:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3fdi

Go back to Chlorine Binding Sites List in 3fdi
Chlorine binding site 1 out of 2 in the Crystal Structure of Uncharacterized Protein From Eubacterium Ventriosum Atcc 27560.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Uncharacterized Protein From Eubacterium Ventriosum Atcc 27560. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl5001

b:38.9
occ:1.00
O A:HOH221 3.2 51.8 1.0
NE1 A:TRP165 3.2 41.1 1.0
NH2 A:ARG10 3.2 32.3 1.0
N A:ARG10 3.3 31.8 1.0
O A:HOH210 3.4 32.9 1.0
CA A:GLY9 3.5 30.5 1.0
O A:ARG10 3.6 37.1 1.0
CD A:ARG10 3.8 32.8 1.0
C A:GLY9 3.9 30.9 1.0
CD1 A:TRP165 4.0 40.8 1.0
CG A:ARG153 4.1 45.9 1.0
O A:HOH220 4.2 36.1 1.0
CE2 A:TRP165 4.2 39.8 1.0
CZ A:ARG10 4.2 34.0 1.0
CA A:GLY102 4.5 33.3 1.0
C A:ARG10 4.5 34.9 1.0
CA A:ARG10 4.5 32.4 1.0
NE A:ARG10 4.5 33.7 1.0
O A:HOH219 4.5 40.4 1.0
CB A:ARG153 4.5 41.1 1.0
O4 A:SO42002 4.5 58.4 1.0
CE2 A:PHE119 4.6 31.9 1.0
CZ2 A:TRP165 4.7 40.5 1.0
O A:ILE8 4.8 30.0 1.0
N A:GLY9 4.8 30.8 1.0
N A:GLY102 5.0 33.4 1.0

Chlorine binding site 2 out of 2 in 3fdi

Go back to Chlorine Binding Sites List in 3fdi
Chlorine binding site 2 out of 2 in the Crystal Structure of Uncharacterized Protein From Eubacterium Ventriosum Atcc 27560.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Uncharacterized Protein From Eubacterium Ventriosum Atcc 27560. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl5001

b:38.2
occ:1.00
O B:HOH207 3.0 42.7 1.0
NH2 B:ARG10 3.2 45.6 1.0
NE1 B:TRP165 3.3 37.0 1.0
N B:ARG10 3.4 35.8 1.0
CA B:GLY9 3.4 34.6 1.0
NE B:ARG10 3.6 46.7 1.0
O B:ARG10 3.8 37.9 1.0
CZ B:ARG10 3.9 45.6 1.0
C B:GLY9 3.9 35.1 1.0
CD1 B:TRP165 4.0 36.9 1.0
CA B:GLY102 4.4 33.8 1.0
CE2 B:TRP165 4.4 34.6 1.0
O B:HOH227 4.4 33.6 1.0
O2 B:SO42005 4.4 51.6 1.0
CD B:ARG153 4.4 44.5 1.0
CA B:ARG10 4.4 37.0 1.0
CG B:ARG153 4.5 40.6 1.0
C B:ARG10 4.5 37.0 1.0
CE2 B:PHE119 4.6 34.5 1.0
CB B:ARG153 4.6 41.0 1.0
O B:HOH210 4.7 45.6 1.0
N B:GLY9 4.7 34.6 1.0
CZ2 B:TRP165 4.8 37.1 1.0
CD B:ARG10 4.8 44.9 1.0
O B:ILE8 4.8 35.1 1.0
N B:GLY102 4.9 33.4 1.0

Reference:

B.Nocek, L.Keigher, R.Jedrzejczak, A.Joachimiak. Crystal Structure of Uncharacterized Protein From Eubacterium Ventriosum Atcc 27560. To Be Published.
Page generated: Fri Jul 11 05:04:57 2025

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