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Chlorine in PDB 3fwh: Structure of Haloalkane Dehalogenase Mutant DHA15 (I135F/C176Y) From Rhodococcus Rhodochrous

Enzymatic activity of Structure of Haloalkane Dehalogenase Mutant DHA15 (I135F/C176Y) From Rhodococcus Rhodochrous

All present enzymatic activity of Structure of Haloalkane Dehalogenase Mutant DHA15 (I135F/C176Y) From Rhodococcus Rhodochrous:
3.8.1.5;

Protein crystallography data

The structure of Structure of Haloalkane Dehalogenase Mutant DHA15 (I135F/C176Y) From Rhodococcus Rhodochrous, PDB code: 3fwh was solved by J.A.Gavira, A.Stsiapanava, M.Kuty, J.Dohnalek, M.Lapkouski, I.Kutasmatanova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.22
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 42.524, 44.370, 46.541, 115.48, 98.41, 109.60
R / Rfree (%) 13 / 16.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Haloalkane Dehalogenase Mutant DHA15 (I135F/C176Y) From Rhodococcus Rhodochrous (pdb code 3fwh). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Haloalkane Dehalogenase Mutant DHA15 (I135F/C176Y) From Rhodococcus Rhodochrous, PDB code: 3fwh:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3fwh

Go back to Chlorine Binding Sites List in 3fwh
Chlorine binding site 1 out of 2 in the Structure of Haloalkane Dehalogenase Mutant DHA15 (I135F/C176Y) From Rhodococcus Rhodochrous


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Haloalkane Dehalogenase Mutant DHA15 (I135F/C176Y) From Rhodococcus Rhodochrous within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:8.5
occ:0.90
O2 A:IPA302 3.0 12.9 1.0
NE1 A:TRP107 3.3 6.6 1.0
ND2 A:ASN41 3.3 7.3 1.0
N A:PRO206 3.5 6.7 1.0
CA A:PRO206 3.6 6.7 1.0
C2 A:IPA302 3.6 10.6 1.0
CD A:PRO206 3.7 6.8 1.0
C A:PHE205 3.7 6.6 1.0
CD1 A:TRP107 3.8 5.8 1.0
CB A:PHE205 3.8 6.8 1.0
CZ A:PHE168 3.8 8.4 1.0
CB A:PRO206 3.9 7.4 1.0
CD1 A:LEU209 3.9 8.9 1.0
CB A:ASN41 4.0 5.9 1.0
O A:PHE205 4.0 7.0 1.0
CE2 A:PHE168 4.1 9.6 1.0
C3 A:IPA302 4.1 13.8 1.0
CG A:ASN41 4.1 6.5 1.0
CG A:LEU209 4.2 7.3 1.0
CD2 A:LEU209 4.4 8.8 1.0
CE2 A:PHE149 4.4 8.5 1.0
CG A:PRO206 4.4 8.0 1.0
CA A:PHE205 4.4 6.9 1.0
CE2 A:TRP107 4.5 6.7 1.0
OD2 A:ASP106 4.6 9.0 1.0
CE1 A:PHE168 4.8 7.7 1.0
CG A:PHE205 4.9 7.2 1.0
C A:PRO206 5.0 6.8 1.0
C1 A:IPA302 5.0 14.0 1.0

Chlorine binding site 2 out of 2 in 3fwh

Go back to Chlorine Binding Sites List in 3fwh
Chlorine binding site 2 out of 2 in the Structure of Haloalkane Dehalogenase Mutant DHA15 (I135F/C176Y) From Rhodococcus Rhodochrous


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Haloalkane Dehalogenase Mutant DHA15 (I135F/C176Y) From Rhodococcus Rhodochrous within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:32.7
occ:1.00
N A:GLY5 2.9 9.1 1.0
O A:HOH419 3.1 23.5 1.0
O A:HOH858 3.2 13.7 0.5
CG A:ASN50 3.3 7.4 1.0
OD1 A:ASN50 3.4 8.2 1.0
O A:HOH545 3.4 42.5 1.0
CA A:ILE4 3.4 12.7 1.0
CB A:ASN50 3.6 6.7 1.0
O A:HOH857 3.6 22.3 1.0
O A:GLU3 3.7 21.0 0.6
C A:ILE4 3.7 9.8 1.0
ND2 A:ASN50 3.7 7.7 1.0
CA A:GLY5 3.9 9.5 1.0
CG2 A:ILE4 4.2 11.6 1.0
CB A:ILE4 4.3 10.8 1.0
O A:GLU3 4.3 19.4 0.4
O A:HOH858 4.4 14.6 0.5
O A:HOH524 4.4 52.2 1.0
N A:ILE4 4.4 16.3 1.0
C A:GLU3 4.5 21.0 0.6
CG A:PRO279 4.5 8.4 1.0
OD1 A:ASP280 4.5 12.4 1.0
CG1 A:ILE4 4.6 12.8 1.0
C A:GLU3 4.7 19.7 0.4
CA A:ASN50 4.7 6.2 1.0
OD2 A:ASP280 4.7 17.1 1.0
O A:HOH498 4.8 40.7 1.0
O A:ILE4 4.9 11.1 1.0
CG A:ASP280 4.9 11.6 1.0

Reference:

A.Stsiapanava, J.Dohnalek, J.A.Gavira, M.Kuty, T.Koudelakova, J.Damborsky, I.Kuta Smatanova. Atomic Resolution Studies of Haloalkane Dehalogenases DHAA04, DHAA14 and DHAA15 with Engineered Access Tunnels. Acta Crystallogr.,Sect.D V. 66 962 2010.
ISSN: ISSN 0907-4449
PubMed: 20823547
DOI: 10.1107/S0907444910027101
Page generated: Sat Jul 20 19:41:27 2024

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