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Chlorine in PDB 3g16: Crystal Structure of Protein of Unknown Function with Cystatin-Like Fold (YP_001022489.1) From Methylobium Petroleophilum PM1 at 1.45 A Resolution

Protein crystallography data

The structure of Crystal Structure of Protein of Unknown Function with Cystatin-Like Fold (YP_001022489.1) From Methylobium Petroleophilum PM1 at 1.45 A Resolution, PDB code: 3g16 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.97 / 1.45
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 48.560, 68.450, 107.460, 90.00, 90.00, 90.00
R / Rfree (%) 14.8 / 16.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Protein of Unknown Function with Cystatin-Like Fold (YP_001022489.1) From Methylobium Petroleophilum PM1 at 1.45 A Resolution (pdb code 3g16). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Protein of Unknown Function with Cystatin-Like Fold (YP_001022489.1) From Methylobium Petroleophilum PM1 at 1.45 A Resolution, PDB code: 3g16:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3g16

Go back to Chlorine Binding Sites List in 3g16
Chlorine binding site 1 out of 4 in the Crystal Structure of Protein of Unknown Function with Cystatin-Like Fold (YP_001022489.1) From Methylobium Petroleophilum PM1 at 1.45 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Protein of Unknown Function with Cystatin-Like Fold (YP_001022489.1) From Methylobium Petroleophilum PM1 at 1.45 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl157

b:27.9
occ:1.00
N A:VAL148 3.1 16.2 1.0
NE A:ARG147 3.2 30.7 1.0
N A:THR149 3.5 16.6 1.0
CD A:ARG147 3.6 28.9 1.0
CA A:ARG147 3.8 17.7 1.0
OG1 A:THR149 3.8 24.2 1.0
CA A:VAL148 3.9 17.9 1.0
C A:ARG147 3.9 16.8 1.0
CZ A:ARG147 4.0 31.8 1.0
O A:THR149 4.0 16.2 1.0
CB A:VAL148 4.0 20.6 1.0
C A:VAL148 4.2 18.5 1.0
NH2 A:ARG147 4.3 32.4 1.0
CB A:ARG147 4.3 22.6 1.0
CA A:THR149 4.5 18.2 1.0
CG A:ARG147 4.6 27.2 1.0
C A:THR149 4.7 15.4 1.0
CB A:THR149 4.7 21.5 1.0
O A:TYR146 4.7 16.9 1.0
CG2 A:VAL148 4.8 21.9 1.0
O A:HOH360 4.9 26.3 1.0
NH1 A:ARG147 5.0 32.1 1.0

Chlorine binding site 2 out of 4 in 3g16

Go back to Chlorine Binding Sites List in 3g16
Chlorine binding site 2 out of 4 in the Crystal Structure of Protein of Unknown Function with Cystatin-Like Fold (YP_001022489.1) From Methylobium Petroleophilum PM1 at 1.45 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Protein of Unknown Function with Cystatin-Like Fold (YP_001022489.1) From Methylobium Petroleophilum PM1 at 1.45 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl158

b:20.6
occ:1.00
O2 A:GOL161 2.9 38.9 1.0
O B:HOH173 3.1 15.9 1.0
N A:SER150 3.3 15.1 1.0
NZ A:LYS153 3.3 17.9 1.0
C2 A:GOL161 3.6 40.9 1.0
CA A:THR149 3.8 18.2 1.0
CB A:SER150 3.9 13.1 1.0
CE A:LYS153 3.9 16.8 1.0
CD A:LYS153 3.9 15.6 1.0
CB A:THR149 4.0 21.5 1.0
C A:THR149 4.0 15.4 1.0
O3 A:GOL161 4.2 43.1 1.0
CA A:SER150 4.2 13.7 1.0
CG2 A:THR149 4.4 22.1 1.0
CG2 B:VAL100 4.4 16.9 1.0
CD1 B:PHE93 4.4 14.5 1.0
C3 A:GOL161 4.5 41.8 1.0
C1 A:GOL161 4.8 40.3 1.0
O A:VAL148 4.8 19.2 1.0
CA B:ASP98 4.9 16.4 1.0
CE1 B:PHE93 4.9 15.2 1.0

Chlorine binding site 3 out of 4 in 3g16

Go back to Chlorine Binding Sites List in 3g16
Chlorine binding site 3 out of 4 in the Crystal Structure of Protein of Unknown Function with Cystatin-Like Fold (YP_001022489.1) From Methylobium Petroleophilum PM1 at 1.45 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Protein of Unknown Function with Cystatin-Like Fold (YP_001022489.1) From Methylobium Petroleophilum PM1 at 1.45 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl159

b:29.4
occ:1.00
O A:HOH204 3.1 21.9 1.0
O A:HOH347 3.2 51.8 1.0
N A:ARG8 3.2 16.1 1.0
CA A:SER7 3.7 15.0 1.0
CG A:ARG8 3.7 17.3 0.2
CB A:SER7 3.8 16.4 1.0
NH1 A:ARG8 3.9 20.5 0.2
C A:SER7 4.0 15.8 1.0
CB A:ARG8 4.0 17.1 0.2
CB A:ARG8 4.0 16.5 0.2
CG A:ARG8 4.0 22.6 0.5
CB A:ARG8 4.2 20.7 0.5
CA A:ARG8 4.2 15.9 0.2
CA A:ARG8 4.2 16.4 0.2
CA A:ARG8 4.3 17.8 0.5
CZ A:ARG8 4.4 19.6 0.2
CD A:ARG8 4.6 18.7 0.2
NE A:ARG8 4.7 19.2 0.2
O A:HOH346 4.9 54.4 1.0
CB A:ALA81 4.9 16.3 1.0
CD A:ARG8 5.0 22.5 0.5
OG A:SER7 5.0 15.1 1.0
N A:SER7 5.0 14.1 1.0

Chlorine binding site 4 out of 4 in 3g16

Go back to Chlorine Binding Sites List in 3g16
Chlorine binding site 4 out of 4 in the Crystal Structure of Protein of Unknown Function with Cystatin-Like Fold (YP_001022489.1) From Methylobium Petroleophilum PM1 at 1.45 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Protein of Unknown Function with Cystatin-Like Fold (YP_001022489.1) From Methylobium Petroleophilum PM1 at 1.45 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl157

b:23.8
occ:1.00
O B:HOH247 3.1 21.1 1.0
O B:HOH332 3.1 33.2 1.0
N B:VAL148 3.1 17.1 1.0
N B:THR149 3.5 15.9 1.0
CA B:ARG147 3.7 21.1 1.0
CG1 B:VAL148 3.9 16.3 0.5
C B:ARG147 3.9 17.6 1.0
CB B:ARG147 4.0 24.0 1.0
CA B:VAL148 4.0 17.7 0.5
CA B:VAL148 4.1 18.1 0.5
O B:THR149 4.1 16.0 1.0
C B:VAL148 4.2 18.8 1.0
CB B:VAL148 4.2 17.8 0.5
CB B:THR149 4.2 17.8 1.0
CA B:THR149 4.3 17.0 1.0
CB B:VAL148 4.5 18.3 0.5
OG1 B:THR149 4.5 20.4 1.0
C B:THR149 4.7 15.8 1.0
CD B:ARG147 4.7 25.2 1.0
CG B:ARG147 4.8 26.5 1.0
O B:TYR146 4.9 20.5 1.0
O B:HOH261 4.9 45.5 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Fri Jul 11 05:25:11 2025

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