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Chlorine in PDB 3gae: Crystal Structure of Pul

Protein crystallography data

The structure of Crystal Structure of Pul, PDB code: 3gae was solved by G.Zhao, H.Schindelin, W.J.Lennarz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.60
Space group P 31
Cell size a, b, c (Å), α, β, γ (°) 64.588, 64.588, 115.798, 90.00, 90.00, 120.00
R / Rfree (%) 17.9 / 21.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Pul (pdb code 3gae). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Pul, PDB code: 3gae:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 3gae

Go back to Chlorine Binding Sites List in 3gae
Chlorine binding site 1 out of 3 in the Crystal Structure of Pul


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Pul within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl3

b:28.9
occ:1.00
O A:HOH101 3.3 21.9 1.0
OD1 A:ASN617 3.3 18.9 1.0
O A:HOH373 3.3 35.1 1.0
CE A:MET570 3.9 14.7 1.0
CB A:ASN617 4.0 12.2 1.0
CG A:GLN614 4.0 15.8 1.0
CA A:GLN614 4.0 14.9 1.0
CG A:ASN617 4.1 16.2 1.0
O A:HOH203 4.2 15.6 1.0
O A:LYS613 4.3 16.4 1.0
CG A:LYS613 4.3 22.4 1.0
N A:GLN614 4.4 14.9 1.0
SD A:MET570 4.4 15.3 1.0
C A:LYS613 4.5 17.2 1.0
CB A:GLN614 4.6 14.1 1.0

Chlorine binding site 2 out of 3 in 3gae

Go back to Chlorine Binding Sites List in 3gae
Chlorine binding site 2 out of 3 in the Crystal Structure of Pul


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Pul within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1

b:20.1
occ:1.00
O B:HOH54 3.2 11.5 1.0
ND2 B:ASN493 3.2 6.8 1.0
CG B:ASN493 4.2 4.7 1.0
OD1 B:ASN493 4.3 5.0 1.0
OE1 B:GLU531 4.7 23.2 1.0
O B:HOH352 4.8 23.9 1.0
O B:HOH145 4.9 11.9 1.0

Chlorine binding site 3 out of 3 in 3gae

Go back to Chlorine Binding Sites List in 3gae
Chlorine binding site 3 out of 3 in the Crystal Structure of Pul


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Pul within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl2

b:27.1
occ:1.00
O B:HOH58 2.9 12.0 1.0
N B:TRP693 3.2 8.1 1.0
N B:THR692 3.5 10.1 1.0
CD1 B:TRP693 3.6 11.4 1.0
CB B:THR692 3.8 8.5 1.0
CB B:TRP693 3.8 7.0 1.0
CA B:THR692 3.9 8.8 1.0
C B:THR692 4.0 7.4 1.0
CG B:PRO656 4.1 6.7 1.0
CA B:TRP693 4.1 7.0 1.0
CG B:TRP693 4.1 5.9 1.0
C B:VAL691 4.4 12.1 1.0
O B:HOH29 4.4 11.5 1.0
O B:HOH121 4.4 19.3 1.0
O B:ASN651 4.4 9.0 1.0
CB B:PRO656 4.5 6.2 1.0
OG1 B:THR692 4.5 10.8 1.0
CG2 B:THR692 4.7 8.1 1.0
CA B:VAL691 4.8 14.2 1.0
CG1 B:VAL691 4.8 11.2 1.0
NE1 B:TRP693 4.8 11.0 1.0
CA B:PRO656 4.9 5.4 1.0
CD B:PRO656 5.0 7.7 1.0

Reference:

G.Zhao, G.Li, H.Schindelin, W.J.Lennarz. An Armadillo Motif in UFD3 Interacts with CDC48 and Is Involved in Ubiquitin Homeostasis and Protein Degradation Proc.Natl.Acad.Sci.Usa V. 106 16197 2009.
ISSN: ISSN 0027-8424
PubMed: 19805280
DOI: 10.1073/PNAS.0908321106
Page generated: Fri Jul 11 05:35:31 2025

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