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Chlorine in PDB 3gfa: Crystal Structure of A Putative Nitroreductase in Complex with Fmn (CD3205) From Clostridium Difficile 630 at 1.35 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Nitroreductase in Complex with Fmn (CD3205) From Clostridium Difficile 630 at 1.35 A Resolution, PDB code: 3gfa was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.99 / 1.35
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 73.336, 109.891, 60.635, 90.00, 104.84, 90.00
R / Rfree (%) 13.4 / 15.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Putative Nitroreductase in Complex with Fmn (CD3205) From Clostridium Difficile 630 at 1.35 A Resolution (pdb code 3gfa). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A Putative Nitroreductase in Complex with Fmn (CD3205) From Clostridium Difficile 630 at 1.35 A Resolution, PDB code: 3gfa:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3gfa

Go back to Chlorine Binding Sites List in 3gfa
Chlorine binding site 1 out of 2 in the Crystal Structure of A Putative Nitroreductase in Complex with Fmn (CD3205) From Clostridium Difficile 630 at 1.35 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Putative Nitroreductase in Complex with Fmn (CD3205) From Clostridium Difficile 630 at 1.35 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl198

b:15.4
occ:1.00
O2' B:FMN200 3.0 11.7 1.0
N A:LYS39 3.1 11.0 1.0
O A:HOH271 3.1 25.1 1.0
C10 B:FMN200 3.2 10.9 1.0
O B:HOH272 3.3 20.0 1.0
C4A B:FMN200 3.5 9.7 1.0
N10 B:FMN200 3.5 10.9 1.0
N1 B:FMN200 3.6 11.6 1.0
CA A:LYS39 3.6 11.6 1.0
CD A:LYS39 3.7 16.3 1.0
C2' B:FMN200 3.8 10.4 1.0
N5 B:FMN200 3.8 10.9 1.0
CE A:LYS39 3.9 17.8 1.0
CG A:LYS39 3.9 14.2 1.0
C9A B:FMN200 4.0 9.7 1.0
C4 B:FMN200 4.1 10.7 1.0
C2 B:FMN200 4.1 11.4 1.0
C5A B:FMN200 4.1 9.2 1.0
C1' B:FMN200 4.1 11.1 1.0
C A:SER38 4.1 10.8 1.0
O B:HOH350 4.2 37.3 1.0
NZ A:LYS39 4.2 19.9 1.0
CA A:SER38 4.3 10.9 1.0
N3 B:FMN200 4.3 11.5 1.0
CB A:LYS39 4.4 12.4 1.0
OG A:SER38 4.7 13.7 1.0
C A:LYS39 4.7 11.9 1.0
O A:SER37 4.8 10.8 1.0
O B:HOH312 4.8 23.1 1.0
O4 B:FMN200 4.9 12.2 1.0
O2 B:FMN200 4.9 12.7 1.0
N A:ASN40 4.9 10.3 1.0
C9 B:FMN200 5.0 9.2 1.0

Chlorine binding site 2 out of 2 in 3gfa

Go back to Chlorine Binding Sites List in 3gfa
Chlorine binding site 2 out of 2 in the Crystal Structure of A Putative Nitroreductase in Complex with Fmn (CD3205) From Clostridium Difficile 630 at 1.35 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Putative Nitroreductase in Complex with Fmn (CD3205) From Clostridium Difficile 630 at 1.35 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl198

b:17.7
occ:1.00
O B:HOH361 3.0 30.4 1.0
N B:LYS39 3.0 14.0 1.0
O2' A:FMN200 3.1 13.0 1.0
C10 A:FMN200 3.2 12.0 1.0
O B:HOH287 3.4 21.8 1.0
N10 A:FMN200 3.4 11.9 1.0
C4A A:FMN200 3.5 11.7 1.0
CA B:LYS39 3.5 14.9 1.0
N1 A:FMN200 3.6 12.7 1.0
CD B:LYS39 3.6 19.4 1.0
N5 A:FMN200 3.8 12.8 1.0
C2' A:FMN200 3.8 12.3 1.0
CG B:LYS39 4.0 17.4 1.0
C9A A:FMN200 4.0 11.2 1.0
CE B:LYS39 4.0 21.4 1.0
C4 A:FMN200 4.1 13.0 1.0
C5A A:FMN200 4.1 11.5 1.0
C1' A:FMN200 4.1 11.6 1.0
C B:SER38 4.1 14.8 1.0
C2 A:FMN200 4.2 13.2 1.0
CA B:SER38 4.3 13.6 1.0
NZ B:LYS39 4.3 23.7 1.0
CB B:LYS39 4.3 16.2 1.0
N3 A:FMN200 4.4 12.8 1.0
C B:LYS39 4.7 15.2 1.0
OG B:SER38 4.7 15.8 1.0
O A:HOH277 4.8 27.0 1.0
O B:SER37 4.8 13.3 1.0
O4 A:FMN200 4.9 13.4 1.0
N B:ASN40 4.9 14.6 1.0
O2 A:FMN200 4.9 14.2 1.0
C9 A:FMN200 5.0 12.0 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Fri Jul 11 05:38:55 2025

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