Atomistry » Chlorine » PDB 3gky-3gxg » 3glm
Atomistry »
  Chlorine »
    PDB 3gky-3gxg »
      3glm »

Chlorine in PDB 3glm: Glutaconyl-Coa Decarboxylase A Subunit From Clostridium Symbiosum Co- Crystallized with Crotonyl-Coa

Enzymatic activity of Glutaconyl-Coa Decarboxylase A Subunit From Clostridium Symbiosum Co- Crystallized with Crotonyl-Coa

All present enzymatic activity of Glutaconyl-Coa Decarboxylase A Subunit From Clostridium Symbiosum Co- Crystallized with Crotonyl-Coa:
4.1.1.70;

Protein crystallography data

The structure of Glutaconyl-Coa Decarboxylase A Subunit From Clostridium Symbiosum Co- Crystallized with Crotonyl-Coa, PDB code: 3glm was solved by D.Kress, D.Brugel, W.Buckel, L.-O.Essen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.76 / 2.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 101.500, 167.450, 138.110, 90.00, 89.98, 90.00
R / Rfree (%) 19.3 / 23

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Glutaconyl-Coa Decarboxylase A Subunit From Clostridium Symbiosum Co- Crystallized with Crotonyl-Coa (pdb code 3glm). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Glutaconyl-Coa Decarboxylase A Subunit From Clostridium Symbiosum Co- Crystallized with Crotonyl-Coa, PDB code: 3glm:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3glm

Go back to Chlorine Binding Sites List in 3glm
Chlorine binding site 1 out of 4 in the Glutaconyl-Coa Decarboxylase A Subunit From Clostridium Symbiosum Co- Crystallized with Crotonyl-Coa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Glutaconyl-Coa Decarboxylase A Subunit From Clostridium Symbiosum Co- Crystallized with Crotonyl-Coa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl589

b:46.3
occ:1.00
 O A:HOH699 2.9 25.2 1.0
N A:ILE420 3.1 34.6 1.0
N A:ALA460 3.4 30.1 1.0
CB A:ALA460 3.5 30.2 1.0
N A:ALA461 3.5 29.0 1.0
CB A:ALA459 3.6 29.8 1.0
CB A:ILE420 3.7 34.7 1.0
CA A:ALA460 3.7 29.9 1.0
CA A:GLY419 3.8 33.7 1.0
CG1 C:VAL217 3.9 37.1 1.0
C A:ALA460 3.9 29.5 1.0
CG1 A:ILE420 4.0 35.2 1.0
CA A:ILE420 4.0 34.9 1.0
C A:GLY419 4.0 34.2 1.0
CD1 A:ILE420 4.0 35.5 1.0
C A:ALA459 4.3 30.2 1.0
O C:HOH725 4.3 23.7 1.0
O A:ILE420 4.4 35.1 1.0
CA A:ALA461 4.4 28.8 1.0
CB A:ALA461 4.4 28.8 1.0
CA A:ALA459 4.5 30.1 1.0
C A:ILE420 4.7 35.2 1.0
O C:VAL217 4.9 39.5 1.0
O A:ALA460 4.9 29.4 1.0
CG2 A:ILE420 5.0 34.1 1.0
CE1 C:TYR199 5.0 35.6 1.0

Chlorine binding site 2 out of 4 in 3glm

Go back to Chlorine Binding Sites List in 3glm
Chlorine binding site 2 out of 4 in the Glutaconyl-Coa Decarboxylase A Subunit From Clostridium Symbiosum Co- Crystallized with Crotonyl-Coa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Glutaconyl-Coa Decarboxylase A Subunit From Clostridium Symbiosum Co- Crystallized with Crotonyl-Coa within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl589

b:38.4
occ:1.00
 O D:HOH702 2.9 31.8 1.0
N B:ILE420 3.2 34.5 1.0
N B:ALA460 3.3 30.2 1.0
CB B:ALA460 3.4 30.3 1.0
N B:ALA461 3.4 28.9 1.0
CB B:ILE420 3.7 34.6 1.0
CB B:ALA459 3.7 29.9 1.0
CA B:ALA460 3.7 29.9 1.0
C B:ALA460 3.9 29.5 1.0
CG1 B:ILE420 3.9 35.2 1.0
CG1 D:VAL217 3.9 37.1 1.0
CA B:GLY419 3.9 33.7 1.0
CD1 B:ILE420 3.9 35.4 1.0
CA B:ILE420 4.0 34.9 1.0
C B:GLY419 4.1 34.1 1.0
C B:ALA459 4.3 30.2 1.0
CA B:ALA461 4.3 28.7 1.0
CB B:ALA461 4.4 28.9 1.0
O B:ILE420 4.5 35.1 1.0
CA B:ALA459 4.6 30.1 1.0
C B:ILE420 4.7 35.2 1.0
O B:ALA460 4.9 29.4 1.0
CE1 D:TYR199 4.9 35.6 1.0
O D:VAL217 4.9 39.4 1.0
CG2 B:ILE420 5.0 34.2 1.0

Chlorine binding site 3 out of 4 in 3glm

Go back to Chlorine Binding Sites List in 3glm
Chlorine binding site 3 out of 4 in the Glutaconyl-Coa Decarboxylase A Subunit From Clostridium Symbiosum Co- Crystallized with Crotonyl-Coa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Glutaconyl-Coa Decarboxylase A Subunit From Clostridium Symbiosum Co- Crystallized with Crotonyl-Coa within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl589

b:45.1
occ:1.00
 O C:HOH613 3.0 30.6 1.0
N C:ILE420 3.2 34.5 1.0
N C:ALA460 3.4 30.1 1.0
N C:ALA461 3.4 29.0 1.0
CB C:ALA460 3.4 30.1 1.0
CB C:ILE420 3.6 34.6 1.0
CA C:ALA460 3.7 29.9 1.0
CB C:ALA459 3.7 29.8 1.0
CG1 A:VAL217 3.9 37.0 1.0
CG1 C:ILE420 3.9 35.2 1.0
C C:ALA460 3.9 29.6 1.0
CD1 C:ILE420 3.9 35.5 1.0
CA C:GLY419 3.9 33.6 1.0
CA C:ILE420 4.0 34.8 1.0
C C:GLY419 4.0 34.1 1.0
C C:ALA459 4.3 30.2 1.0
CA C:ALA461 4.3 28.7 1.0
O C:ILE420 4.4 35.0 1.0
CB C:ALA461 4.4 28.7 1.0
O A:HOH716 4.5 24.2 1.0
CA C:ALA459 4.6 30.1 1.0
C C:ILE420 4.7 35.2 1.0
CE1 A:TYR199 4.9 35.6 1.0
O C:ALA460 4.9 29.4 1.0
CG2 C:ILE420 4.9 34.1 1.0
O A:VAL217 4.9 39.4 1.0

Chlorine binding site 4 out of 4 in 3glm

Go back to Chlorine Binding Sites List in 3glm
Chlorine binding site 4 out of 4 in the Glutaconyl-Coa Decarboxylase A Subunit From Clostridium Symbiosum Co- Crystallized with Crotonyl-Coa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Glutaconyl-Coa Decarboxylase A Subunit From Clostridium Symbiosum Co- Crystallized with Crotonyl-Coa within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl589

b:43.3
occ:1.00
 N D:ILE420 3.2 34.5 1.0
N D:ALA460 3.3 30.2 1.0
N D:ALA461 3.3 28.9 1.0
CB D:ALA460 3.4 30.2 1.0
CB D:ALA459 3.6 29.8 1.0
CB D:ILE420 3.7 34.7 1.0
CA D:ALA460 3.7 29.8 1.0
C D:ALA460 3.8 29.5 1.0
CA D:GLY419 3.8 33.6 1.0
CG1 D:ILE420 3.9 35.2 1.0
CG1 B:VAL217 4.0 37.0 1.0
CA D:ILE420 4.0 34.8 1.0
C D:GLY419 4.0 34.1 1.0
CD1 D:ILE420 4.0 35.4 1.0
C D:ALA459 4.2 30.2 1.0
CA D:ALA461 4.3 28.7 1.0
CB D:ALA461 4.3 28.8 1.0
O D:ILE420 4.5 35.1 1.0
CA D:ALA459 4.5 30.1 1.0
C D:ILE420 4.7 35.2 1.0
O D:ALA460 4.8 29.3 1.0
CE1 B:TYR199 5.0 35.6 1.0
CG2 D:ILE420 5.0 34.2 1.0
O B:VAL217 5.0 39.4 1.0

Reference:

D.Kress, D.Brugel, I.Schall, D.Linder, W.Buckel, L.-O.Essen. An Asymmetric Model For Na+-Translocating Glutaconyl-Coa Decarboxylases J.Biol.Chem. V. 284 28401 2009.
ISSN: ISSN 0021-9258
PubMed: 19654317
DOI: 10.1074/JBC.M109.037762
Page generated: Sat Jul 20 20:23:01 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy