Chlorine in PDB 3hj7: Crystal Structure of Tils C-Terminal Domain

The structure of Crystal Structure of Tils C-Terminal Domain, PDB code: 3hj7 was solved by K.Nakanishi, L.Bonnefond, S.Kimura, T.Suzuki, R.Ishitani, O.Nureki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.20
Space group	P 64 2 2
Cell size a, b, c (Å), α, β, γ (°)	72.880, 72.880, 172.740, 90.00, 90.00, 120.00
R / Rfree (%)	21.8 / 24.7

The binding sites of Chlorine atom in the Crystal Structure of Tils C-Terminal Domain (pdb code 3hj7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Tils C-Terminal Domain, PDB code: 3hj7:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Crystal Structure of Tils C-Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Tils C-Terminal Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1 b:65.1 occ:1.00 O A:HOH473 2.5 73.3 1.0 N A:GLN447 3.1 62.1 1.0 NE2 A:GLN451 3.3 53.7 1.0 CA A:ALA446 3.6 54.3 1.0 C A:ALA446 3.9 62.2 1.0 O A:GLN447 3.9 54.1 1.0 CA A:GLN447 4.1 64.3 1.0 CD A:ARG449 4.1 58.7 1.0 NH1 A:ARG449 4.1 69.8 1.0 CB A:ALA446 4.2 53.4 1.0 CB A:GLN447 4.2 71.1 1.0 NE A:ARG449 4.2 65.8 1.0 CZ A:ARG449 4.3 77.2 1.0 C A:GLN447 4.4 61.0 1.0 OD1 A:ASP376 4.5 83.6 1.0 CD A:GLN451 4.6 74.4 1.0 O A:GLU445 4.6 58.9 1.0 CG A:GLN447 4.7 72.8 1.0 CB A:ASP376 4.7 56.6 1.0 CG A:ARG449 4.7 65.1 1.0 N A:ALA446 4.8 60.0 1.0 OG A:SER379 4.9 0.3 1.0 NH2 A:ARG449 5.0 65.1 1.0

Chlorine binding site 2 out of 4 in the Crystal Structure of Tils C-Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Tils C-Terminal Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl2 b:80.3 occ:1.00 CB A:LYS366 3.7 58.2 1.0 CA A:LYS366 3.9 62.2 1.0 N A:GLN367 3.9 66.4 1.0 C A:LYS366 4.4 69.8 1.0 CB A:GLN367 4.9 84.5 1.0

Chlorine binding site 3 out of 4 in the Crystal Structure of Tils C-Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Tils C-Terminal Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl3 b:67.1 occ:1.00 N A:ARG365 3.5 67.4 1.0 NH1 A:ARG365 4.0 88.0 1.0 CA A:PRO364 4.2 47.8 1.0 CB A:ARG365 4.2 69.7 1.0 N A:LYS366 4.2 64.8 1.0 O A:HOH30 4.3 69.3 1.0 CA A:ARG365 4.3 70.8 1.0 C A:PRO364 4.3 57.4 1.0 CD A:ARG365 4.6 74.8 1.0 CB A:PRO364 4.7 48.5 1.0 C A:ARG365 4.7 63.7 1.0 CG A:LYS366 4.8 65.7 1.0 NZ A:LYS366 4.8 74.4 1.0 CB A:LYS366 4.8 58.2 1.0 CG A:ARG365 5.0 62.9 1.0 CE A:LYS366 5.0 70.8 1.0

Chlorine binding site 4 out of 4 in the Crystal Structure of Tils C-Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Tils C-Terminal Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl4 b:93.7 occ:1.00 O A:HOH8 3.3 57.8 1.0 O A:HOH13 3.4 67.7 1.0 NZ A:LYS440 3.6 96.6 1.0 CD A:LYS440 4.1 81.0 1.0 CE A:LYS440 4.4 83.8 1.0 ND2 A:ASN370 4.5 77.1 1.0 OD1 A:ASN370 4.7 64.5 1.0

K.Nakanishi, L.Bonnefond, S.Kimura, T.Suzuki, R.Ishitani, O.Nureki. Structural Basis For Translational Fidelity Ensured By Transfer Rna Lysidine Synthetase. Nature V. 461 1144 2009.
ISSN: ISSN 0028-0836
PubMed: 19847269
DOI: 10.1038/NATURE08474