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Chlorine in PDB 3hpb: Crystal Structure of SNX5-Px Domain in P212121 Space Group

Protein crystallography data

The structure of Crystal Structure of SNX5-Px Domain in P212121 Space Group, PDB code: 3hpb was solved by L.M.I.Koharudin, W.Furey, A.M.Gronenborn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.78 / 2.19
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 42.957, 75.874, 77.512, 90.00, 90.00, 90.00
R / Rfree (%) 23.6 / 28.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of SNX5-Px Domain in P212121 Space Group (pdb code 3hpb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of SNX5-Px Domain in P212121 Space Group, PDB code: 3hpb:

Chlorine binding site 1 out of 1 in 3hpb

Go back to Chlorine Binding Sites List in 3hpb
Chlorine binding site 1 out of 1 in the Crystal Structure of SNX5-Px Domain in P212121 Space Group


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of SNX5-Px Domain in P212121 Space Group within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl181

b:45.1
occ:1.00
O A:HOH193 2.9 33.5 1.0
O A:HOH261 3.1 48.3 1.0
N A:VAL45 3.2 40.9 1.0
CG A:PRO97 3.8 43.5 1.0
O A:ASP43 3.9 43.2 1.0
CA A:LYS44 3.9 42.1 1.0
O A:HOH316 3.9 65.9 1.0
C A:LYS44 4.1 41.1 1.0
CB A:PRO97 4.1 43.2 1.0
CB A:VAL45 4.2 40.3 1.0
CA A:VAL45 4.2 39.7 1.0
CD A:PRO97 4.2 43.2 1.0
CG2 A:VAL45 4.3 39.1 1.0
O A:HOH209 4.3 45.1 1.0
CE A:LYS44 4.3 51.0 1.0
O A:VAL45 4.5 38.9 1.0
CB A:HIS69 4.6 38.6 1.0
C A:ASP43 4.7 43.3 1.0
N A:LYS44 4.8 42.2 1.0
CB A:LYS44 4.8 42.0 1.0
C A:VAL45 4.8 39.5 1.0
O A:HOH192 4.9 44.0 1.0

Reference:

L.M.I.Koharudin, W.Furey, H.Liu, Y.-J.Liu, A.M.Gronenborn. The Phox Domain of Sorting Nexin 5 Lacks Ptdins(3)P Specificity and Preferentially Binds to Ptdins(4,5)P2 To Be Published.
Page generated: Fri Jul 11 06:03:49 2025

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