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Chlorine in PDB 3jcu: Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution

Other elements in 3jcu:

The structure of Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution also contains other interesting chemical elements:

Magnesium (Mg) 206 atoms
Manganese (Mn) 8 atoms
Iron (Fe) 4 atoms
Calcium (Ca) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution (pdb code 3jcu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution, PDB code: 3jcu:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3jcu

Go back to Chlorine Binding Sites List in 3jcu
Chlorine binding site 1 out of 4 in the Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:0.6
occ:1.00
 O A:MET331 3.0 92.5 1.0
O D:LYS317 3.3 66.8 1.0
CB D:LEU320 3.7 83.0 1.0
C A:MET331 3.8 80.6 1.0
CD2 D:LEU321 3.9 79.4 1.0
CA A:HIS332 3.9 84.8 1.0
CA D:LYS317 3.9 69.8 1.0
C D:LYS317 3.9 61.9 1.0
CD1 D:LEU320 4.0 0.7 1.0
NH1 A:ARG334 4.0 0.7 1.0
CG D:LEU321 4.0 78.3 1.0
CB D:LYS317 4.0 79.1 1.0
N A:GLU333 4.1 0.5 1.0
N A:HIS332 4.3 83.3 1.0
C A:HIS332 4.3 97.1 1.0
NZ D:LYS317 4.5 1.0 1.0
CG D:LEU320 4.5 94.7 1.0
N D:LEU321 4.5 70.7 1.0
CB A:MET331 4.7 76.7 1.0
CG D:LYS317 4.7 93.9 1.0
CE D:LYS317 4.7 0.7 1.0
CD1 D:LEU321 4.8 77.2 1.0
CA D:LEU320 4.8 76.3 1.0
C D:LEU320 4.8 71.5 1.0
CA A:MET331 4.9 71.3 1.0
CD A:ARG334 4.9 0.4 1.0
N A:ARG334 5.0 0.6 1.0

Chlorine binding site 2 out of 4 in 3jcu

Go back to Chlorine Binding Sites List in 3jcu
Chlorine binding site 2 out of 4 in the Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:0.8
occ:1.00
 N C:GLU354 2.5 0.8 1.0
N C:THR355 3.1 93.5 1.0
C C:GLY353 3.2 0.7 1.0
CA C:GLY353 3.3 0.2 1.0
CA C:GLU354 3.4 0.5 1.0
CB C:GLU354 3.6 0.6 1.0
C C:GLU354 3.7 0.6 1.0
CD2 A:PHE339 3.9 0.5 1.0
O C:GLY352 4.0 96.9 1.0
CB C:THR355 4.1 85.7 1.0
CA C:THR355 4.1 85.2 1.0
O C:GLY353 4.2 0.3 1.0
CG2 C:THR355 4.3 86.5 1.0
N C:GLY353 4.5 0.9 1.0
CG C:GLU354 4.5 0.0 1.0
CE2 A:PHE339 4.5 0.4 1.0
C C:GLY352 4.7 0.3 1.0
N A:ASN338 4.7 0.3 1.0
CG A:PHE339 4.9 0.2 1.0
O C:GLU354 4.9 0.8 1.0
CB A:PHE339 4.9 0.3 1.0
N A:PHE339 5.0 0.1 1.0

Chlorine binding site 3 out of 4 in 3jcu

Go back to Chlorine Binding Sites List in 3jcu
Chlorine binding site 3 out of 4 in the Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Cl403

b:0.6
occ:1.00
 O a:MET331 3.0 92.5 1.0
O d:LYS317 3.3 66.8 1.0
CB d:LEU320 3.7 83.0 1.0
C a:MET331 3.8 80.6 1.0
CD2 d:LEU321 3.9 79.4 1.0
CA a:HIS332 3.9 84.8 1.0
CA d:LYS317 3.9 69.8 1.0
C d:LYS317 3.9 61.9 1.0
CD1 d:LEU320 4.0 0.7 1.0
NH1 a:ARG334 4.0 0.7 1.0
CG d:LEU321 4.0 78.3 1.0
CB d:LYS317 4.0 79.1 1.0
N a:GLU333 4.1 0.5 1.0
N a:HIS332 4.3 83.3 1.0
C a:HIS332 4.3 97.1 1.0
NZ d:LYS317 4.5 1.0 1.0
CG d:LEU320 4.5 94.7 1.0
N d:LEU321 4.5 70.7 1.0
CB a:MET331 4.7 76.7 1.0
CG d:LYS317 4.7 93.9 1.0
CE d:LYS317 4.7 0.7 1.0
CD1 d:LEU321 4.8 77.2 1.0
CA d:LEU320 4.8 76.3 1.0
C d:LEU320 4.8 71.5 1.0
CA a:MET331 4.9 71.3 1.0
CD a:ARG334 4.9 0.4 1.0
N a:ARG334 5.0 0.6 1.0

Chlorine binding site 4 out of 4 in 3jcu

Go back to Chlorine Binding Sites List in 3jcu
Chlorine binding site 4 out of 4 in the Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Cl404

b:0.8
occ:1.00
 N c:GLU354 2.5 0.8 1.0
N c:THR355 3.1 93.5 1.0
C c:GLY353 3.2 0.7 1.0
CA c:GLY353 3.3 0.2 1.0
CA c:GLU354 3.4 0.5 1.0
CB c:GLU354 3.6 0.6 1.0
C c:GLU354 3.7 0.6 1.0
CD2 a:PHE339 3.9 0.5 1.0
O c:GLY352 4.0 96.9 1.0
CB c:THR355 4.1 85.7 1.0
CA c:THR355 4.1 85.2 1.0
O c:GLY353 4.2 0.3 1.0
CG2 c:THR355 4.3 86.5 1.0
N c:GLY353 4.5 0.9 1.0
CG c:GLU354 4.5 0.0 1.0
CE2 a:PHE339 4.5 0.4 1.0
C c:GLY352 4.7 0.3 1.0
N a:ASN338 4.7 0.3 1.0
CG a:PHE339 4.9 0.2 1.0
O c:GLU354 4.9 0.8 1.0
CB a:PHE339 4.9 0.3 1.0
N a:PHE339 5.0 0.1 1.0

Reference:

X.P.Wei, X.D.Su, P.Cao, X.Y.Liu, W.R.Chang, M.Li, X.Z.Zhang, Z.F.Liu. Structure of Spinach Photosystem II-Lhcii Supercomplex at 3.2 A Resolution Nature V. 534 69 2016.
ISSN: ISSN 0028-0836
DOI: 10.1038/NATURE18020
Page generated: Fri Jul 11 06:39:16 2025

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