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Chlorine in PDB 3k2x: Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From Burkholderia Pseudomallei in Complex with 5'-Iodo- Cytosine

Enzymatic activity of Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From Burkholderia Pseudomallei in Complex with 5'-Iodo- Cytosine

All present enzymatic activity of Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From Burkholderia Pseudomallei in Complex with 5'-Iodo- Cytosine:
4.6.1.12;

Protein crystallography data

The structure of Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From Burkholderia Pseudomallei in Complex with 5'-Iodo- Cytosine, PDB code: 3k2x was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.18 / 1.85
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 117.475, 67.673, 60.025, 90.00, 96.13, 90.00
R / Rfree (%) 17 / 20.4

Other elements in 3k2x:

The structure of Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From Burkholderia Pseudomallei in Complex with 5'-Iodo- Cytosine also contains other interesting chemical elements:

Potassium (K) 1 atom
Iodine (I) 4 atoms
Zinc (Zn) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From Burkholderia Pseudomallei in Complex with 5'-Iodo- Cytosine (pdb code 3k2x). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From Burkholderia Pseudomallei in Complex with 5'-Iodo- Cytosine, PDB code: 3k2x:

Chlorine binding site 1 out of 1 in 3k2x

Go back to Chlorine Binding Sites List in 3k2x
Chlorine binding site 1 out of 1 in the Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From Burkholderia Pseudomallei in Complex with 5'-Iodo- Cytosine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From Burkholderia Pseudomallei in Complex with 5'-Iodo- Cytosine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl165

b:45.8
occ:1.00
 N A:LYS138 3.1 13.8 1.0
N A:ASN136 3.4 13.6 1.0
CG A:GLN103 3.5 14.2 1.0
CA A:GLY143 3.6 12.5 1.0
CA A:LYS138 3.7 14.0 1.0
N A:GLU137 3.7 13.8 1.0
CB A:THR135 3.7 15.3 1.0
CB A:GLN103 3.7 14.9 1.0
CA A:GLN103 3.8 14.3 1.0
C A:ASN136 3.9 14.1 1.0
CA A:ASN136 4.0 14.0 1.0
O A:GLY143 4.1 12.9 1.0
C A:GLU137 4.2 14.2 1.0
OG1 A:THR135 4.3 12.7 1.0
CA A:GLU137 4.3 14.9 1.0
C A:THR135 4.4 14.8 1.0
CB A:ASN136 4.4 13.6 1.0
C A:GLY143 4.4 13.0 1.0
CA A:THR135 4.4 14.1 1.0
O A:HOH281 4.4 29.7 1.0
O A:LEU142 4.5 13.3 1.0
N A:GLY143 4.5 11.4 1.0
O A:ASN136 4.5 13.4 1.0
N A:GLN103 4.5 13.4 1.0
CG2 A:THR135 4.6 15.8 1.0
CG A:LYS138 4.6 15.2 1.0
C A:LYS138 4.7 13.5 1.0
CB A:LYS138 4.7 13.7 1.0
O A:HOH262 4.8 20.2 1.0
C A:LEU142 4.8 12.2 1.0
N A:LEU139 4.9 12.5 1.0
CD A:GLN103 4.9 14.2 1.0

Reference:

D.W.Begley, R.C.Hartley, D.R.Davies, T.E.Edwards, J.T.Leonard, J.Abendroth, C.A.Burris, J.Bhandari, P.J.Myler, B.L.Staker, L.J.Stewart. Leveraging Structure Determination with Fragment Screening For Infectious Disease Drug Targets: Mecp Synthase From Burkholderia Pseudomallei. J Struct Funct Genomics V. 12 63 2011.
PubMed: 21359640
DOI: 10.1007/S10969-011-9102-6
Page generated: Fri Jul 11 06:50:20 2025

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